View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0871_low_4 (Length: 306)

Name: NF0871_low_4
Description: NF0871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0871_low_4
NF0871_low_4
[»] chr5 (8 HSPs)
chr5 (29-277)||(42897373-42897621)
chr5 (23-277)||(36982239-36982493)
chr5 (29-277)||(14044109-14044356)
chr5 (89-277)||(2970725-2970911)
chr5 (44-195)||(36767890-36768039)
chr5 (89-196)||(33404365-33404470)
chr5 (223-278)||(33403246-33403301)
chr5 (47-80)||(29785258-29785291)
[»] chr4 (22 HSPs)
chr4 (28-277)||(925134-925383)
chr4 (34-277)||(39788046-39788289)
chr4 (34-277)||(40071453-40071696)
chr4 (37-277)||(37064760-37065000)
chr4 (34-277)||(54438161-54438404)
chr4 (29-277)||(17493806-17494054)
chr4 (34-277)||(33800787-33801029)
chr4 (34-277)||(20789726-20789968)
chr4 (34-277)||(34408661-34408904)
chr4 (34-277)||(47199539-47199782)
chr4 (88-277)||(32217995-32218184)
chr4 (26-277)||(21240379-21240630)
chr4 (88-270)||(52101108-52101290)
chr4 (88-277)||(53509700-53509889)
chr4 (92-269)||(28910220-28910395)
chr4 (95-277)||(46870660-46870840)
chr4 (89-277)||(3172079-3172266)
chr4 (26-170)||(51744515-51744659)
chr4 (203-277)||(51744657-51744731)
chr4 (159-277)||(41555515-41555633)
chr4 (223-278)||(10441196-10441251)
chr4 (29-134)||(10441529-10441632)
[»] chr3 (13 HSPs)
chr3 (36-277)||(51545715-51545956)
chr3 (34-277)||(40496826-40497069)
chr3 (34-277)||(41346100-41346343)
chr3 (29-277)||(48169777-48170025)
chr3 (29-277)||(54014290-54014538)
chr3 (58-277)||(24709063-24709282)
chr3 (34-277)||(50676528-50676769)
chr3 (88-277)||(48737579-48737768)
chr3 (37-195)||(13542799-13542957)
chr3 (191-277)||(12568169-12568255)
chr3 (191-277)||(13544633-13544719)
chr3 (91-199)||(30462801-30462907)
chr3 (223-278)||(30459858-30459913)
[»] chr2 (18 HSPs)
chr2 (37-277)||(2110273-2110513)
chr2 (34-277)||(29194041-29194284)
chr2 (23-277)||(43370727-43370981)
chr2 (28-277)||(28585681-28585930)
chr2 (34-277)||(45080424-45080665)
chr2 (47-277)||(4828106-4828336)
chr2 (34-276)||(8381320-8381562)
chr2 (88-267)||(1779130-1779309)
chr2 (111-277)||(42846990-42847154)
chr2 (88-218)||(9370486-9370616)
chr2 (154-277)||(39646451-39646573)
chr2 (88-247)||(43377266-43377423)
chr2 (201-277)||(16964869-16964945)
chr2 (29-134)||(30422588-30422693)
chr2 (25-199)||(31921616-31921788)
chr2 (88-185)||(16970301-16970396)
chr2 (223-278)||(31922032-31922087)
chr2 (89-150)||(39646365-39646426)
[»] chr8 (11 HSPs)
chr8 (28-277)||(18575081-18575330)
chr8 (29-277)||(17493579-17493827)
chr8 (34-277)||(11254553-11254796)
chr8 (47-277)||(27820826-27821056)
chr8 (34-277)||(39906963-39907204)
chr8 (34-277)||(38069899-38070142)
chr8 (36-277)||(12738372-12738613)
chr8 (89-277)||(17336029-17336217)
chr8 (34-277)||(9753823-9754065)
chr8 (88-277)||(13243605-13243793)
chr8 (27-199)||(11147782-11147952)
[»] chr7 (15 HSPs)
chr7 (27-277)||(6392324-6392574)
chr7 (29-277)||(40232114-40232362)
chr7 (34-277)||(4041000-4041243)
chr7 (47-277)||(29737458-29737688)
chr7 (34-277)||(41427652-41427895)
chr7 (38-277)||(31689361-31689600)
chr7 (29-277)||(25943648-25943892)
chr7 (34-277)||(27596090-27596332)
chr7 (90-277)||(38276605-38276792)
chr7 (47-277)||(24300171-24300391)
chr7 (88-277)||(21442858-21443045)
chr7 (111-277)||(48838113-48838277)
chr7 (39-199)||(22619883-22620041)
chr7 (28-199)||(22338101-22338270)
chr7 (223-278)||(22337763-22337818)
[»] scaffold0519 (1 HSPs)
scaffold0519 (34-277)||(10597-10840)
[»] chr1 (14 HSPs)
chr1 (34-277)||(1929221-1929463)
chr1 (28-277)||(46862609-46862858)
chr1 (29-277)||(32045886-32046134)
chr1 (34-277)||(50777050-50777293)
chr1 (29-277)||(28036699-28036948)
chr1 (88-277)||(38321698-38321887)
chr1 (34-277)||(39150901-39151144)
chr1 (34-277)||(8229116-8229360)
chr1 (28-277)||(46370980-46371223)
chr1 (26-277)||(1207448-1207697)
chr1 (28-277)||(40562434-40562681)
chr1 (159-277)||(38817827-38817945)
chr1 (117-269)||(9129491-9129641)
chr1 (201-266)||(47603744-47603809)
[»] chr6 (13 HSPs)
chr6 (23-277)||(28541580-28541834)
chr6 (45-277)||(29182644-29182876)
chr6 (34-277)||(30736472-30736715)
chr6 (34-277)||(16435832-16436071)
chr6 (34-277)||(12350325-12350568)
chr6 (88-277)||(7271136-7271325)
chr6 (34-277)||(1241162-1241404)
chr6 (88-277)||(13042025-13042213)
chr6 (91-277)||(1870587-1870771)
chr6 (111-277)||(31013576-31013742)
chr6 (53-277)||(13210397-13210618)
chr6 (212-276)||(31833747-31833811)
chr6 (88-195)||(31833649-31833751)
[»] scaffold0061 (1 HSPs)
scaffold0061 (27-277)||(10014-10264)
[»] scaffold0047 (1 HSPs)
scaffold0047 (29-277)||(69806-70054)
[»] scaffold0532 (1 HSPs)
scaffold0532 (29-277)||(3867-4115)
[»] scaffold0318 (1 HSPs)
scaffold0318 (126-277)||(16410-16561)
[»] scaffold0016 (1 HSPs)
scaffold0016 (27-209)||(92166-92348)
[»] scaffold1194 (1 HSPs)
scaffold1194 (88-277)||(1032-1210)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 42897373 - 42897621
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| |||||||| |||| ||||||| ||||||||||| |||       |||||||||||||| ||| ||||||||||||||||||||||    
T  42897373 atactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagtt 42897472  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  42897473 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 42897572  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42897573 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 42897621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 36982493 - 36982239
Alignment:
Q  23 aatttaatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttac 122  Q
    |||| ||||| ||||||||| |||||||| |||| ||||||| ||||||||||| |||       |||||||||||||| ||| ||||||||||||||||    
T  36982493 aattcaatactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttac 36982394  T
Q  123 tgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtat 222  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  36982393 tgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattattttatttgttccactacaaactttaacatggggaccacaaaaagtat 36982294  T
Q  223 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  36982293 ttataaggggtaaatctgtcaaattttgcctagaaatatgagaaggtcaagtatt 36982239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 14044356 - 14044109
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| |||||||| |||| ||||||||||||||||||  |||       |||||||||||||| ||| ||||||||||||| ||| ||||    
T  14044356 atactccctccgtccctgaataagtgacctatttgatcatttcacacgtattaagaaaagtgtaaagatgaaagaaagagagtgatacttt-actaagtt 14044258  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  14044257 gcccttgtcattattttgaaactttttcacttttaaataatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttataa 14044158  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  14044157 gaggtaaatctgtcaaattttgcttagaaatctgagaaggtcaaatatt 14044109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 277
Target Start/End: Original strand, 2970725 - 2970911
Alignment:
Q  89 tgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcg-ttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    ||||||||||||| ||| | | ||||| ||| ||||| ||||||||||   |||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  2970725 tgtaaagatgaaagaaagataatgatattttcactgaattgcccttgttaattattttgaaacctt--cacttttaagtaatgattactttctttgttcc 2970822  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     |||||||||||| ||| | || ||||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||| ||||||||||    
T  2970823 actacaaacttta-cattgagaccacaaaaagtatttatacggggtaaatttgtcaaattctgcttagaaatttgagaatgtcaagtatt 2970911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 36767890 - 36768039
Alignment:
Q  44 ctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttatt 143  Q
    |||||||| |||| ||||||| || |||||||| |||       |||||||||||||| ||| ||||||||| ||||||||| |||||||| |  |||||    
T  36767890 ctgaataagtgacctatttgaccacttcacacagattaaaaagagtgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatt 36767989  T
Q  144 ttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaa 195  Q
    || |||| ||  ||||||||| |||||||||||||||||||||| |||||||    
T  36767990 tttaaacctt--cacttttaaataatgattactttctttgttccactacaaa 36768039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 33404470 - 33404365
Alignment:
Q  89 tgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcct 188  Q
    ||||||||||||| ||| ||||||||| ||||||||| |||||||| |  ||||||| |||| |||  |||||||| |||| ||||||||  |||||||     
T  33404470 tgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatttttaaaccttt--acttttaaataataattactttaattgttcca 33404373  T
Q  189 ctacaaac 196  Q
    ||||||||    
T  33404372 ctacaaac 33404365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 33403301 - 33403246
Alignment:
Q  223 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 278  Q
    ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||||    
T  33403301 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattt 33403246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 29785258 - 29785291
Alignment:
Q  47 aataaatgacatatttgatcatttcacacaaatt 80  Q
    ||||| ||||||||||||||||||||||||||||    
T  29785258 aataattgacatatttgatcatttcacacaaatt 29785291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 925134 - 925383
Alignment:
Q  28 aatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagt 127  Q
    ||||| ||||||||| || ||||| |||| ||||||||||||||||||| |||       |||||||||| ||| ||||| |||||||||||||||||||    
T  925134 aatactccctccgtcccttaataagtgacttatttgatcatttcacacagattaagaaaagtgtaaagataaaagaaataaagtgatacttttactgagt 925233  T
Q  128 tgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttata 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  925234 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttata 925333  T
Q  228 aggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  925334 aggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 925383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 39788289 - 39788046
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    |||| |||| |||||||| |||| ||||||| ||||||||||| |||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  39788289 cccttcgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgccct 39788190  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  39788189 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggt 39788090  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  39788089 aaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 39788046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 40071453 - 40071696
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||| ||||||| ||||||||||| |||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  40071453 ccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgccct 40071552  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  40071553 tgtcattattttgaaactttttcacttttaagcaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggt 40071652  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40071653 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 40071696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 37 - 277
Target Start/End: Original strand, 37064760 - 37065000
Alignment:
Q  37 tccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgt 136  Q
    |||||| |||||||| |||| ||||||||||||||||| | |||       |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  37064760 tccgtccctgaataagtgacctatttgatcatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgt 37064859  T
Q  137 cgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaa 236  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  37064860 catttttttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttataaggggtaaa 37064959  T
Q  237 tctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  37064960 tatgtcaaattttgcttagaaatctgagaaggtcaagtatt 37065000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 54438161 - 54438404
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||| ||||||| ||||||||||  |||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  54438161 ccctccgtccctaaataagtgacctatttgaccatttcacaccgattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgccct 54438260  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  54438261 tgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggt 54438360  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  54438361 aaatctgtcaaattttgcttagaaatctgagaagatcaagtatt 54438404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 17494054 - 17493806
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| || ||||| |||| ||||||| ||||||||||| |||       |||||||||||||| ||| ||||||||||||||| ||||||    
T  17494054 atactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttattgagtt 17493955  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  17493954 gcccttgtcattattttgaaactttttcacttttaagtaataattattttctttgttccactacaaactttaacatggggaccacaaaaagtttttataa 17493855  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17493854 ggggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtatt 17493806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 33800787 - 33801029
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||| ||||||| ||||||||||| |||       ||||||||||| || ||| |||||||||||||||||||||||||||    
T  33800787 ccctccgtccctgaataagtgacctatttgaccatttcacacagattcagaaaagtgtaaagatggaagaaagagagtgatacttttactgagttgccct 33800886  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||| |||    
T  33800887 tgtcatcattttgaaactttttcacttttaaataatgattactttctttgttccactacaaactttaatatggggaccac-aaaagtatttataagaggt 33800985  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  33800986 aaatctgtcaaattttacttagaaatctgagaaggtcaagtatt 33801029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 20789968 - 20789726
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||  |||||||| |||  ||||||| ||||||||||| |||       |||||||||||||| ||| |||||||||||||||||||| |||| |    
T  20789968 ccctccgttcctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagctgcc-t 20789870  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |    
T  20789869 tgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataagggat 20789770  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  20789769 aaatctgtcaaattttacttagaaatctgagaagatcaagtatt 20789726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 34408661 - 34408904
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||| ||||||  ||||||||||| |||       |||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  34408661 ccctccgtccctgaataagtgacctatttggccatttcacacatattaggaaaagtgtaaagatgaaagaaagagaatgatacttttattgagttgccct 34408760  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||| ||| |||||||||||||||||||||||    
T  34408761 tgtcattattttgaaactttttcacttttaagtaatgattattttctttgttatactacaaactttaacatgtggaccacaaaaagtatttataaggggt 34408860  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||| | |||||||||||||||||||||||||    
T  34408861 aaatctgtcaaattttacctagaaatctgagaaggtcaagtatt 34408904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 47199782 - 47199539
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||  |||||||| |||  ||||||| ||||||||||| |||       |||||||||||||| ||| ||||||||| ||||| |||||||||||    
T  47199782 ccctccgtacctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgagttgccct 47199683  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  47199682 tgtcattattttaaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttatatggggt 47199583  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||| ||||||||| |||||||||||||||||||||||||    
T  47199582 aaatctgttaaattttgcctagaaatctgagaaggtcaagtatt 47199539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 88 - 277
Target Start/End: Original strand, 32217995 - 32218184
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| ||| | ||| ||||||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32217995 gtgtaaagatgaaagaaagagaattatatttttactgaatagtccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttcc 32218094  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||    
T  32218095 actacaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttaaaaatctgagaaaatcaagtatt 32218184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 277
Target Start/End: Complemental strand, 21240630 - 21240379
Alignment:
Q  26 ttaatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactga 125  Q
    ||||||| ||||||||| ||  |||  |||| || |||| ||||||||||| |||       ||||| |||||||| ||| ||| ||||| |||||||||    
T  21240630 ttaatactccctccgtccctcgatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagagaatgatatttttactga 21240531  T
Q  126 gttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtattta 225  Q
     ||| | |||||  |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  21240530 attgacattgtcactattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtattta 21240431  T
Q  226 taaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    || ||||||||||||||||||| | ||||||| |||||||||||||||||||    
T  21240430 tatggggtaaatctgtcaaattctacttagaagtctgagaaggtcaagtatt 21240379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 88 - 270
Target Start/End: Complemental strand, 52101290 - 52101108
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||||| | ||||| ||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  52101290 gtgtaaagatgaaagaaatataatgatatttttactgaattgcacttgtcattattttgaaattttttcacttttaagtaatggttattttctttgttcc 52101191  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtc 270  Q
     ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  52101190 actacaaactttaacatgggaaccacaaaaagtatttataaagggtaaatctgtcaaattttgcttataaatctgagaaggtc 52101108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 88 - 277
Target Start/End: Original strand, 53509700 - 53509889
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| ||| ||||| | ||||||| ||| | ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  53509700 gtgtaaagatgaaagaaaaagaatgatattgttactgaattgtcattgtcattattttgaaactttttcacttttaaataatgattattttctttgttcc 53509799  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     ||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||||| | ||||||||||||| |||||||| ||||    
T  53509800 actacaaattttaacatggggatcacaaaaagtatttataaggaataaatatgtcaaattctccttagaaatctgataaggtcaaatatt 53509889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 28910220 - 28910395
Alignment:
Q  92 aaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctcta 191  Q
    |||||||||| ||| ||| ||||| ||||||||| ||| ||||||  |||||||||||| ||  |||||||||||||||||||||||||||||||| |||    
T  28910220 aaagatgaaagaaagagaatgatatttttactgaattgtccttgttattattttgaaacctt--cacttttaagtaatgattactttctttgttccacta 28910317  T
Q  192 caaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggt 269  Q
     ||||||| ||||||  | ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  28910318 gaaacttttacatggaaaccacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggt 28910395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 95 - 277
Target Start/End: Complemental strand, 46870840 - 46870660
Alignment:
Q  95 gatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaa 194  Q
    ||||||| ||| ||| ||||| ||||||||| | | ||||||  |||||||||||| ||  ||||||||||||||||| |||||||||||||| ||||||    
T  46870840 gatgaaagaaagagaatgatatttttactgaatagtccttgttattattttgaaacctt--cacttttaagtaatgatgactttctttgttccactacaa 46870743  T
Q  195 actttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||| | |||| ||||||||| ||||||||||||    
T  46870742 acttttacatggggaccacaaaaagtatttataagggataaatttgtcaaattgtacttaaaaatctgagcaggtcaagtatt 46870660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 277
Target Start/End: Original strand, 3172079 - 3172266
Alignment:
Q  89 tgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcg-ttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    ||||||||||||| ||| | | ||||| ||||||||| ||| ||||||   |||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  3172079 tgtaaagatgaaaaaaagataatgatatttttactgaattgtccttgttaattattttgaaacctt--cacttttaagtaatgattactttctttgttcc 3172176  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     ||||||||||| |||| | || ||||||||||||||||||  ||||||| ||||||||| ||||||||||| |||||| ||||||||||    
T  3172177 actacaaacttttacattgagaccacaaaaagtatttataaaaggtaaatttgtcaaattctgcttagaaatttgagaaagtcaagtatt 3172266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 51744515 - 51744659
Alignment:
Q  26 ttaatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactga 125  Q
    ||||||| | ||||||| |||||||| |||| ||||||| ||||||||||| |||       |||||||||||  | ||| ||||||||||||||||| |    
T  51744515 ttaatactctctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgtgagaaagagagtgatacttttactaa 51744614  T
Q  126 gttgcccttgtcgttattttgaaactttttcacttttaagtaatg 170  Q
    |||||||||||| |||||||||||||| |||||||||||||||||    
T  51744615 gttgcccttgtcattattttgaaacttgttcacttttaagtaatg 51744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 51744657 - 51744731
Alignment:
Q  203 atggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51744657 atggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 51744731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 41555633 - 41555515
Alignment:
Q  159 ttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaa 258  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||| | || |||||||||||  |||||||||||||  |||||||||  ||||| |||    
T  41555633 ttttaagtaatgattactttctttgtttcactacaaacttttacatagagaccacaaaaagtaactataaggggtaaacttgtcaaattaagcttaaaaa 41555534  T
Q  259 tctgagaaggtcaagtatt 277  Q
    | |||||||||||| ||||    
T  41555533 tttgagaaggtcaattatt 41555515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 10441251 - 10441196
Alignment:
Q  223 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 278  Q
    ||||||| ||||||  |||||||||||||||  |||| ||||||||||||||||||    
T  10441251 ttataagaggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattt 10441196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 10441632 - 10441529
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| |||||||| |||| || |||| ||||||||||| |||       |||||||||| ||| ||  ||||||||| ||||||||| ||    
T  10441632 atactccctccgtccctgaataagtgacctacttgaccatttcacacagattaagataagtgtaaagataaaagaa--agagtgatatttttactgaatt 10441535  T
Q  129 gccctt 134  Q
    ||||||    
T  10441534 gccctt 10441529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 36 - 277
Target Start/End: Complemental strand, 51545956 - 51545715
Alignment:
Q  36 ctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttg 135  Q
    ||||||| |||||||| |||| ||||||||||||||||||| |||       |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  51545956 ctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttg 51545857  T
Q  136 tcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaa 235  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  51545856 tcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaa 51545757  T
Q  236 atctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51545756 atctgtcaaattttgcttagaaatctgagaaggtcaagtatt 51545715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 40497069 - 40496826
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||| ||||||| ||||||||||| |||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  40497069 ccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgccct 40496970  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  40496969 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggt 40496870  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  40496869 aaatctgtcaaattttgtttagaaatctgagaaggtcaagtatt 40496826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 41346343 - 41346100
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| ||||||||||||  |||||||||| |||       |||||||||||||| |||   |||||||||||||||||||||||||    
T  41346343 ccctccgtccctgaataagtgacatatttgactatttcacacagattaagaaaagtgtaaagatgaaagaaagtaagtgatacttttactgagttgccct 41346244  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  41346243 tgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggt 41346144  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41346143 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 41346100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 48170025 - 48169777
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| || ||||| |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| ||||||||||| |||||||| |    
T  48170025 atactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatactattactgagct 48169926  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  48169925 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 48169826  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48169825 gggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 48169777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 54014538 - 54014290
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||| ||| || ||||| | || ||||||| ||||||||||| |||       |||||||||| ||| ||| ||||||||||||||||||||||    
T  54014538 atactccctctgtcccttaataagtaacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagtt 54014439  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  54014438 gcccttatcattattttgaaactttttcacttttaagtaataattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 54014339  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54014338 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 54014290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 58 - 277
Target Start/End: Complemental strand, 24709282 - 24709063
Alignment:
Q  58 tatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttca 157  Q
    ||||||| ||||||||||| |||       |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  24709282 tatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaattttttca 24709183  T
Q  158 cttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaa 257  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||||||||| ||    
T  24709182 cttttaagtaatgattactttctttgtttcactacaaactttaacatgaggaccacaaaaagtatttataaaggataaatctgtcaaattttgcttataa 24709083  T
Q  258 atctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||    
T  24709082 atctgagaaggtcaagtatt 24709063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 50676769 - 50676528
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| ||||||||| ||||||||||||||| |    
T  50676769 ccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttgcc-t 50676671  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  50676670 tgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacat-gggaccacaaaaagtatttataaggggt 50676572  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  50676571 aaatctgtcaaattttgcttaaaaatctgagaaggtcaagtatt 50676528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 48737768 - 48737579
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    ||||| |||||||| ||| | | ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48737768 gtgtagagatgaaagaaagaaaatgatatttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttcc 48737669  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |||||| |||||||| ||| |||||||||    
T  48737668 actacaaactttaacatggggaccacaaaaagtatttataaagggtaaatttgtcaaattctgcttaaaaatctgaaaagatcaagtatt 48737579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 195
Target Start/End: Original strand, 13542799 - 13542957
Alignment:
Q  37 tccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgt 136  Q
    |||||| |||||||| |||| ||||||| ||||||| | | |||       |||||||||||||| ||| ||| ||||||||||||||||||||||||||    
T  13542799 tccgtccctgaataagtgacctatttgaccatttcatatagattaagaaaagtgtaaagatgaaagaaagagattgatacttttactgagttgcccttgt 13542898  T
Q  137 cgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaa 195  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  13542899 cattattttaaaactttttcacttttaagtaatgattactttctttgtttcgctacaaa 13542957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 12568169 - 12568255
Alignment:
Q  191 acaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12568169 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtatt 12568255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 13544633 - 13544719
Alignment:
Q  191 acaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13544633 acaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtatt 13544719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 30462907 - 30462801
Alignment:
Q  91 taaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctct 190  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||| |  ||||||| ||||   ||||||||||| |||| ||||||||  ||||||| ||    
T  30462907 taaagatgaaagaaatagagtgatatttttactgaattgcccttattattatttttaaac--cttcacttttaaataataattactttaattgttccact 30462810  T
Q  191 acaaacttt 199  Q
    |||||||||    
T  30462809 acaaacttt 30462801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 30459913 - 30459858
Alignment:
Q  223 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 278  Q
    ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||||    
T  30459913 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattt 30459858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 277
Target Start/End: Complemental strand, 2110513 - 2110273
Alignment:
Q  37 tccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgt 136  Q
    |||||| |||||||| |||||||||||||||||||||||| |||       |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  2110513 tccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgt 2110414  T
Q  137 cgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaa 236  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2110413 cattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaa 2110314  T
Q  237 tctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  2110313 tctgtcaaattttgcttagaaatctgataaggtcaagtatt 2110273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 29194284 - 29194041
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||| ||||||| |||||||||||||||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  29194284 ccctccgtccctgaataagtgacctatttgaccatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgccct 29194185  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  29194184 tgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatcgggaccacaaaaagtatttataaggggt 29194085  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29194084 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 29194041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 43370981 - 43370727
Alignment:
Q  23 aatttaatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttac 122  Q
    |||||||||| ||||||||| || ||||| |||| ||||||| ||||||||||| |||       ||||||| || ||| ||| ||||||||||||||||    
T  43370981 aatttaatactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttac 43370882  T
Q  123 tgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtat 222  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  43370881 tgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtat 43370782  T
Q  223 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43370781 ttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtatt 43370727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 28585681 - 28585930
Alignment:
Q  28 aatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagt 127  Q
    ||||| || |||||| || ||||| |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| |||||||||||||||||||||    
T  28585681 aatactccatccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagt 28585780  T
Q  128 tgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttata 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28585781 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttata 28585880  T
Q  228 aggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||    
T  28585881 aagggtaaatctgtcaaattttgcttagaaatctgagaaggttaagtatt 28585930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 45080424 - 45080665
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||| ||||||| ||||||||||| |||       |||||||||||||| |||  ||||||||||||||||||||||||||    
T  45080424 ccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaa--gagtgatacttttactgagttgccct 45080521  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    | || |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  45080522 tatcattatgttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggt 45080621  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45080622 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 45080665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 47 - 277
Target Start/End: Original strand, 4828106 - 4828336
Alignment:
Q  47 aataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttg 146  Q
    ||||| |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||    
T  4828106 aataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaaaagagtgatacttttactgagttgcccttgtcattattttg 4828205  T
Q  147 aaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 246  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  4828206 aaactttttcacttttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttataaggggtaaatttgtcaaat 4828305  T
Q  247 tttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||| |||||||||||| ||||    
T  4828306 tttgcttagaaatttgagaaggtcaaatatt 4828336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 34 - 276
Target Start/End: Original strand, 8381320 - 8381562
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||  ||||||| ||||||||||| |||        ||||||||||||| |||||||||||||||||||||||||||||||    
T  8381320 ccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaatagagtgatacttttactgagttgccct 8381419  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||  || |||||||||||||||||||||||    
T  8381420 tgtcattattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaattttaacatgaagaccacaaaaagtatttataaggggt 8381519  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtat 276  Q
    ||||||||||||||||  |||||||| ||||||||||||||||    
T  8381520 aaatctgtcaaattttatttagaaatttgagaaggtcaagtat 8381562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 267
Target Start/End: Original strand, 1779130 - 1779309
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| | | ||||| ||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1779130 gtgtaaagatgaaagaaagataatgatatttttactgaattgtctttgtcattattttgaaactttttcacttttaagtaatgattactttctttattcc 1779229  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaag 267  Q
     ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  1779230 actacaaactttaacatggggaccacaaaaagtatttataaagggtaaatctgttaaattctgcttagaaatctgagaag 1779309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 111 - 277
Target Start/End: Original strand, 42846990 - 42847154
Alignment:
Q  111 tgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggat 210  Q
    ||||| ||||||| | ||| ||||||  |||||||||||  | ||||||||||||||||||||| ||||||||||||  |||||||||| |||||| ||     
T  42846990 tgatatttttactaaattgtccttgttattattttgaaa--tcttcacttttaagtaatgattattttctttgttccattacaaacttttacatggagaa 42847087  T
Q  211 cacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||    
T  42847088 cacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgaaaaggtcaagtatt 42847154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 9370616 - 9370486
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| | | ||||  ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9370616 gtgtaaagatgaaaaaaagaaaatgatttttttactgaattgtccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttc 9370517  T
Q  188 tctacaaactttaacatggggatcacaaaaa 218  Q
     ||||||||||||| ||||||||||||||||    
T  9370516 actacaaactttaatatggggatcacaaaaa 9370486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 39646451 - 39646573
Alignment:
Q  154 ttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgctt 253  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||| |  ||    
T  39646451 ttcacttttaagtaatgattacttt-tttgttccactacaaacttttacatgaggaccacaaaaagtatttataaggggtaaatttgtcaaattctattt 39646549  T
Q  254 agaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||| ||||| ||||    
T  39646550 agaaatctgagaatgtcaaatatt 39646573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 43377266 - 43377423
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| | | ||||||||||||||| |||  |||||  |||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  43377266 gtgtaaagatgaaagaaagaaaatgatacttttactgaattgtacttgttattattttgaaacctt--cacttttaagtaatgattactttctttgttcc 43377363  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaatt 247  Q
     ||||||||||| || ||| ||  |||||||||||||||||| | ||||| |||||||||    
T  43377364 actacaaacttttacttggagactacaaaaagtatttataagagataaatttgtcaaatt 43377423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 16964945 - 16964869
Alignment:
Q  201 acatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||| || ||||||||||||||||||||||||||  ||||||||||| |||| |||| |||||||||||||||||    
T  16964945 acatggagaccacaaaaagtatttataaggggtaaacttgtcaaattttacttaaaaatttgagaaggtcaagtatt 16964869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 30422693 - 30422588
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| |||||||| |||| ||||||| ||||||||||| |||       |||||| ||||||| ||| ||||||||||||||||||||||    
T  30422693 atactccctccgtcgctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaacgatgaaagaaagagagtgatacttttactgagtt 30422594  T
Q  129 gccctt 134  Q
    ||||||    
T  30422593 gccctt 30422588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 31921616 - 31921788
Alignment:
Q  25 tttaatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactg 124  Q
    |||| ||| ||||||||| |||||||| |||  ||||||| ||||||||||| |||       |||||||||||||| ||| ||||||||| |||||||     
T  31921616 tttactactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttacta 31921715  T
Q  125 agttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaacttt 199  Q
    | |||||||| |  ||||||| ||||   ||||||||||| |||| ||||||||  ||||||| |||||| ||||    
T  31921716 aattgcccttattattatttttaaac--cttcacttttaaataataattactttaattgttccactacaagcttt 31921788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 16970396 - 16970301
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgtt 185  Q
    |||||||||| ||| ||| | | ||||| ||||||||| |||||||| |  ||||||| |||| ||  ||||||||||||||||||||||||||||||    
T  16970396 gtgtaaagataaaagaaagataatgatatttttactgaattgcccttattattatttttaaacctt--cacttttaagtaatgattactttctttgtt 16970301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 31922032 - 31922087
Alignment:
Q  223 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 278  Q
    ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||||    
T  31922032 ttataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattt 31922087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 39646365 - 39646426
Alignment:
Q  89 tgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaac 150  Q
    |||||| |||||| ||| ||| ||||| ||||||||| ||||||||||  ||||||||||||    
T  39646365 tgtaaaaatgaaagaaagagaatgatatttttactgaattgcccttgttattattttgaaac 39646426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 18575330 - 18575081
Alignment:
Q  28 aatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagt 127  Q
    ||||| ||||||||| |||||||| |||| |||||||||||||||||||||||       |||||||||||||| ||| |||||||||||||||||||||    
T  18575330 aatactccctccgtccctgaataagtgacctatttgatcatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagt 18575231  T
Q  128 tgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttata 227  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  18575230 tgcccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttata 18575131  T
Q  228 aggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    || | ||||| |||||||||||||||||||||||||||||||| ||||||    
T  18575130 agagataaatttgtcaaattttgcttagaaatctgagaaggtcgagtatt 18575081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 17493827 - 17493579
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| |||||||| |||| ||||||||||||||||||| |||       |||||||||||||| ||| ||||||||||||||||| ||||    
T  17493827 atactccctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagtt 17493728  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  17493727 gcccttgtcattattttgaaactttttcatttttaagtaatgattactttatttgttccactacaaactttaacatggggaccacaaaaagtatttataa 17493628  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  17493627 ggggtaaatctgtcaaattttgtttagaaatctgagaagatcaagtatt 17493579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 11254796 - 11254553
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||| ||||||| |||| |||| |||||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  11254796 ccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgccct 11254697  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||    
T  11254696 tgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaagggt 11254597  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  11254596 aaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 11254553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 47 - 277
Target Start/End: Complemental strand, 27821056 - 27820826
Alignment:
Q  47 aataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttg 146  Q
    ||||| |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||    
T  27821056 aataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttgcccttgtcattattttg 27820957  T
Q  147 aaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 246  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27820956 aaactttttcacttttaagtaatgattactttctttgttccactacaaattttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 27820857  T
Q  247 tttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||||    
T  27820856 tttgcttagaaatctgagaaggtcaagtatt 27820826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 39907204 - 39906963
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||| ||||||| ||||| ||||| |||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  39907204 ccctccgtcccttaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgccct 39907105  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    | || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||    
T  39907104 tatcattattttgaaattttttcacttttaagtaatgattactttctttgttccactacaaactttaacat--ggaccacaaaaagtatttataaggggt 39907007  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39907006 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 39906963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 38069899 - 38070142
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    |||||||||  |||| || |||| ||||||| ||||||||||| |||       |||||||||||||| ||| | |||||||||||||||||||||||||    
T  38069899 ccctccgtccttgaacaagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagatagtgatacttttactgagttgccct 38069998  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||    
T  38069999 tgtcattattttgaaactttttcatttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataatgggt 38070098  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  38070099 aaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 38070142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 36 - 277
Target Start/End: Original strand, 12738372 - 12738613
Alignment:
Q  36 ctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttg 135  Q
    ||||||| || ||||  |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| | | ||||| ||||||||| |||||||||    
T  12738372 ctccgtccctcaatacttgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttg 12738471  T
Q  136 tcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaa 235  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  12738472 tcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggatcacaaaaaatatttataaggggtaa 12738571  T
Q  236 atctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    || ||||||||| ||||||||||||||| |||||||||||||    
T  12738572 atttgtcaaattctgcttagaaatctgataaggtcaagtatt 12738613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 89 - 277
Target Start/End: Original strand, 17336029 - 17336217
Alignment:
Q  89 tgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcct 188  Q
    ||||||||||||| ||| ||| ||||| |||||||||  || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||     
T  17336029 tgtaaagatgaaagaaagagaatgatatttttactgaactgtccttgtcattattttgaaactttttcacttttaagtaatgattactttcgttgttcca 17336128  T
Q  189 ctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  17336129 ctagaaactttaacatgggaaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaaggtcaagtatt 17336217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 9754065 - 9753823
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||  |||| || |||| ||||||||||| |||       |||||||||||||| ||| | | ||||| ||||||||| ||| |||    
T  9754065 ccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattgtcct 9753966  T
Q  134 tgtcg-ttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataagggg 232  Q
    |||   |||||||||||| ||  |||||||||||||||||||||||||||||| | ||||||||||| |||| | || |||||||| |||||||||| ||    
T  9753965 tgttaattattttgaaacctt--cacttttaagtaatgattactttctttgtttcactacaaacttttacattgagaccacaaaaaatatttataagagg 9753868  T
Q  233 taaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||    
T  9753867 taaatttgtcaaattctgcttagaaatttgagaaggtcaagtatt 9753823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 88 - 277
Target Start/End: Original strand, 13243605 - 13243793
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcg-ttattttgaaactttttcacttttaagtaatgattactttctttgttc 186  Q
    |||||||||| ||| ||| | | ||||| ||||||||| ||| ||||||   |||||||||||| ||  || |||||||||||||||| |||||||||||    
T  13243605 gtgtaaagataaaagaaagataatgatatttttactgaattgtccttgttaattattttgaaacctt--catttttaagtaatgattattttctttgttc 13243702  T
Q  187 ctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    | ||||||||||| |||| | || ||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||| ||||    
T  13243703 cactacaaacttttacattgagaccacaaaaagtatttataaggggtgaatttgtcaaattctgcttagaaatttgagaaggtcaaatatt 13243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 11147952 - 11147782
Alignment:
Q  27 taatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgag 126  Q
    |||||| ||||||||| |||||||| |||| || |||||||||||||||| |||       ||||||||||||||  || ||| ||||| |||||||||     
T  11147952 taatactccctccgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaaggaagagaatgatatttttactgaa 11147853  T
Q  127 ttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaacttt 199  Q
    |||||||| |  ||||||| ||||   ||||||||||| |||| ||||||||  ||||||| |||||||||||    
T  11147852 ttgcccttattattatttttaaac--cttcacttttaaataataattactttaattgttccactacaaacttt 11147782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 27 - 277
Target Start/End: Complemental strand, 6392574 - 6392324
Alignment:
Q  27 taatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgag 126  Q
    |||||| |||||||||  ||||||| |||||||||| | ||||||||||| |||       |||||||||||||| ||| ||||||||||||||||| ||    
T  6392574 taatactccctccgtccttgaataagtgacatattttaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaag 6392475  T
Q  127 ttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttat 226  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  6392474 ttgcccttgtcattattttgaaactttttcacttttaagtaatgattaatttctttgttccactacaaactttaacatggggaccacaaaaagtatttat 6392375  T
Q  227 aaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6392374 aaggggtaaatctgtcaaattttgcttagaaatctgagaaggtaaagtatt 6392324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 40232114 - 40232362
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| || ||||| |||  ||||||| ||||||||||| |||       |||||||||| ||| ||| ||||||||||||||||||||||    
T  40232114 atactccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagtt 40232213  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  40232214 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 40232313  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40232314 ggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 40232362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 4041243 - 4041000
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||||||||||| ||||||||||| |||       |||||||||||||| |||  |||||||||||||||||||||| |||    
T  4041243 ccctccgtcccttaataagtgacatatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagggagtgatacttttactgagttgtcct 4041144  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  4041143 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaacaagtatttataaggggt 4041044  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  4041043 aaatccgtcaaattttgcttagaaatctgagaaggtcaagtatt 4041000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 47 - 277
Target Start/End: Complemental strand, 29737688 - 29737458
Alignment:
Q  47 aataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttg 146  Q
    ||||| |||| ||||||| ||||||||||| |||       ||||||| || ||| ||| ||||||||||||||||||||||||||||||| ||||||||    
T  29737688 aataagtgacttatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttgcccttgtcattattttg 29737589  T
Q  147 aaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 246  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29737588 aaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 29737489  T
Q  247 tttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||| |||||||||||||||    
T  29737488 tttgcttagaaatctaagaaggtcaagtatt 29737458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 41427652 - 41427895
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    |||||||||||| ||||||||   ||||||||||||||||||| |||       |||||||||||||| ||| ||||| ||||||||| ||| |||||||    
T  41427652 ccctccgtctctaaataaatggtctatttgatcatttcacacagattaaaaaaagtgtaaagatgaaagaaagagagtaatacttttattgaattgccct 41427751  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||    
T  41427752 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataaggggt 41427851  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  41427852 aaatctgtcaaattttgcttagaaatctgagaagatcaaatatt 41427895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 38 - 277
Target Start/End: Original strand, 31689361 - 31689600
Alignment:
Q  38 ccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtc 137  Q
    ||||| || ||||| |||||||||| | ||||||||||| |||       |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  31689361 ccgtccctaaataagtgacatatttcaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtc 31689460  T
Q  138 gttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaat 237  Q
     ||||||||||||||||||||||||||  ||||||||||||||||||| | ||| ||||||||||||| ||| |||||||||||| ||||||||||||||    
T  31689461 attattttgaaactttttcacttttaaaaaatgattactttctttgtttcactataaactttaacatgaggaccacaaaaagtatatataaggggtaaat 31689560  T
Q  238 ctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31689561 ctgtcaaattttgcttagaaatctgagaaggtcaagtatt 31689600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 25943648 - 25943892
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| |||||||| |||| ||||||||||||||||| |  ||        ||||||||||||| ||| ||||||||||||||||||| ||    
T  25943648 atactccctccgtccctgaataagtgacctatttgatcatttcacaga--ttaagaaaattgtaaagatgaaagaaagagagtgatacttttactgaatt 25943745  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   || |||||||||||||    
T  25943746 gccattgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggga--ccataaagtatttataa 25943843  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25943844 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 25943892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 27596090 - 27596332
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||| ||||||| ||||| ||||| |||       |||||||||||||| ||| |||||||||||||||||| ||||||||    
T  27596090 ccctccgtccctaaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttgccct 27596189  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||| |||||||||||||||||| ||||    
T  27596190 tgtcattattttgaaactttttcacttttaagtaatgattattttctttgtttcactacaaactttaacat-gggaccacaaaaagtatttataaagggt 27596288  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  27596289 aaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 27596332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 90 - 277
Target Start/End: Original strand, 38276605 - 38276792
Alignment:
Q  90 gtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctc 189  Q
    |||||||||||| ||| ||| ||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38276605 gtaaagatgaaagaaagagaatgatgtttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccac 38276704  T
Q  190 tacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||    
T  38276705 tacaaactttaatatgaggaccacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatatgaaaaggtcaagtatt 38276792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 47 - 277
Target Start/End: Original strand, 24300171 - 24300391
Alignment:
Q  47 aataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttg 146  Q
    ||||| |||||||||||| ||||||||||| |||       |||| ||||||||| ||| ||||||||||||||||||||||||||||||              
T  24300171 aataagtgacatatttgaccatttcacacagattaagaaaagtgtgaagatgaaagaaagagagtgatacttttactgagttgcccttgt---------- 24300260  T
Q  147 aaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaat 246  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24300261 aaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtatttataaggggtaaatctgtcaaat 24300360  T
Q  247 tttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||| ||| |||||||||||||    
T  24300361 tttgcttagaaatttgataaggtcaagtatt 24300391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 88 - 277
Target Start/End: Original strand, 21442858 - 21443045
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||||||| ||||| ||||||| | ||||||||||  |||||||||||||||  ||||||||||||||| ||||||||||| ||||    
T  21442858 gtgtaaagatgaaaaaaatagaatgatatttttactaaattgcccttgttattattttgaaacttt--cacttttaagtaatggttactttctttattcc 21442955  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     || |||||||| |||||| || ||||||||||||||||||||| ||||| ||||||||| | |||| ||||||||||||||||||||||    
T  21442956 actgcaaacttttacatggagaccacaaaaagtatttataagggataaatttgtcaaattctacttaaaaatctgagaaggtcaagtatt 21443045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 111 - 277
Target Start/End: Complemental strand, 48838277 - 48838113
Alignment:
Q  111 tgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggat 210  Q
    ||||| ||||||| | ||| ||||||  ||||||| |||||||  |||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||     
T  48838277 tgatatttttactaaattgtccttgttattattttaaaacttt--cacttttaagtaatgattactttctttgttccactacacacttttacatggagac 48838180  T
Q  211 cacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||    
T  48838179 cacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaagtcaagtatt 48838113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 22620041 - 22619883
Alignment:
Q  39 cgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcg 138  Q
    |||| |||||||| |||| || |||||||||||||||| |||       |||||||||||||| ||| ||||||||| ||||| ||| ||||| || |      
T  22620041 cgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgaattgcctttatta 22619942  T
Q  139 ttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaacttt 199  Q
    ||||||| |||| ||  ||||||||| |||| ||||||||  ||||||| |||||||||||    
T  22619941 ttatttttaaacctt--cacttttaaataataattactttaattgttccactacaaacttt 22619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 22338270 - 22338101
Alignment:
Q  28 aatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagt 127  Q
    ||||| ||||||||| || ||||| |||| || || | ||||||||||| |||       |||||||||||||| ||| ||||||||| ||||||||| |    
T  22338270 aatactccctccgtccctaaataagtgacctacttaaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactgaat 22338171  T
Q  128 tgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaacttt 199  Q
    ||||||| |  ||||||| ||||   ||||||||||| |||| ||||||||   | |||| |||||||||||    
T  22338170 tgcccttattattatttttaaac--cttcacttttaaataataattactttaaatattccactacaaacttt 22338101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 22337818 - 22337763
Alignment:
Q  223 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattt 278  Q
    ||||||||||||||  |||||| ||||||||  |||| ||||||||||||||||||    
T  22337818 ttataaggggtaaaattgtcaatttttgctttaaaatttgagaaggtcaagtattt 22337763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 10597 - 10840
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||| ||||||| |||| |||| |||||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  10597 ccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgccct 10696  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||    
T  10697 tgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatggggaccacaaaaagtatttataaagggt 10796  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  10797 aaatctgtcaaattttgcttagaaatctgataaggtcaagtatt 10840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 1929221 - 1929463
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||       |||||||||||||| ||| |||||||||||||||||||||||||||    
T  1929221 ccctccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttgccct 1929320  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  1929321 tgtcattattttgaaactttttcacttttaagtaatgattttttt-tttgttccactacaaactttaacatggggaccacaaaaaatatttataaggggt 1929419  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  1929420 aaatctgtcaaattttgcttagaaatatgagaaggtcaagtatt 1929463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 46862858 - 46862609
Alignment:
Q  28 aatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagt 127  Q
    ||||| ||||||||| || ||||| |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| |||||||||||||| ||||||    
T  46862858 aatactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttcctgagt 46862759  T
Q  128 tgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttata 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  46862758 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttata 46862659  T
Q  228 aggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  46862658 aggggtaaatctgtcaaattttgcttaaaaatctaagaaggtcaagtatt 46862609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 32046134 - 32045886
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| |||||| || |||||||| |||  ||||||| ||||||||||| |||       ||||||| |||||| ||| | |||||||||||||| |||||    
T  32046134 atactccctccatcactgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaaaatgaaagaaagaaagtgatacttttaccgagtt 32046035  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  32046034 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttataa 32045935  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32045934 ggggtaaatctttcaaattttgcttagaaatctgagaaggtcaagtatt 32045886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 50777293 - 50777050
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| |||||||||||||||||||||||||||    
T  50777293 ccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttgccct 50777194  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||    
T  50777193 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccccaaaaagtatttataaggggt 50777094  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  50777093 aaatctgtcaaattttgcttagaaatttaagaaggtcaagtatt 50777050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 28036699 - 28036948
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatactttt-actgagt 127  Q
    |||| |||| |||| || ||||| |||| ||||||| |||||||||||||||       |||||||||| ||| ||| ||||||||| |||| |||||||    
T  28036699 atactcccttcgtcccttaataagtgacttatttgaccatttcacacaaattaagaaaagtgtaaagataaaagaaagagagtgatattttttactgagt 28036798  T
Q  128 tgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttata 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28036799 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatggggaccacaaaaagtatttata 28036898  T
Q  228 aggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28036899 agggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 28036948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 38321887 - 38321698
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321887 gtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttcc 38321788  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     ||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  38321787 actacaaactttaacatggggaccacaaaaagtatttataagggttaaatcttttaaattttgcttagaaatctgagaaggtcaagtatt 38321698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 39150901 - 39151144
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| || ||||| |||  ||||||| ||||||||||| |||        ||||||||| ||| ||| ||| |||||||||||||||||||||||    
T  39150901 ccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagataaaagaaagagaatgatacttttactgagttgccct 39151000  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  39151001 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgaggaccacaaaaagtatttataaggggt 39151100  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  39151101 aaatctgtcaaattttgcttagaaatctaagaaggtcaagtatt 39151144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 8229360 - 8229116
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaata-gagtgatacttttactgagttgccc 132  Q
    ||||| |||||||||||| |||  ||||||| ||||||||||| |||       |||||||||||||| ||| | |||||||| ||||||||||||||||    
T  8229360 ccctcggtctctgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaaaaagagtgatatttttactgagttgccc 8229261  T
Q  133 ttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataagggg 232  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||    
T  8229260 ttgtcattattttaaaactttttcacttttaagtaatgattactttctttatttcactacaaactttaacatggggaccacaaaaagtatttataagggg 8229161  T
Q  233 taaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||| |||||||||||||||| |||||| ||||||| |||||||    
T  8229160 taaatttgtcaaattttgcttaaaaatctaagaaggttaagtatt 8229116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 46371223 - 46370980
Alignment:
Q  28 aatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagt 127  Q
    ||||| ||||||||| || ||||| |||  ||||||| ||||||||||| |||       |||||||||||||| ||| ||||||||||||||||||| |    
T  46371223 aataccccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgaat 46371124  T
Q  128 tgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttata 227  Q
    |||||||||| |||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||||    
T  46371123 tgcccttgtcattattttgaaactttttca-----aagtaatgattactttctttgttccactacaaactttaatatggg-accacaaaaagtatttata 46371030  T
Q  228 aggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46371029 aggggtaaatttgtcaaattttgcttagaaatctgagaaggtcaagtatt 46370980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 277
Target Start/End: Original strand, 1207448 - 1207697
Alignment:
Q  26 ttaatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactga 125  Q
    ||||||| ||||||||| || ||||  |||| || |||| ||||||||||| |||       ||||| |||||||| ||| | | ||||| |||||||||    
T  1207448 ttaatactccctccgtcccttaatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagataatgatatttttactga 1207547  T
Q  126 gttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtattta 225  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  | | |||||||||||    
T  1207548 attgcccttgtcattattttgaaactttttcacttttaagtaatgattactttccttgttcctctacaaactttaacataggggac-ccaaaagtattta 1207646  T
Q  226 taaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  1207647 taa-gggtaaatctgtcaaattctgcttagaaatctgagaaggtcaagtatt 1207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 40562434 - 40562681
Alignment:
Q  28 aatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagt 127  Q
    ||||| ||||||||| || ||||  |||| || |||| ||||||||||| |||       |||||||||||||| ||| ||| ||||| ||||||||| |    
T  40562434 aatactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaat 40562533  T
Q  128 tgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttata 227  Q
    |||||||||  ||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||||| |||||| || |||||| ||||||||||    
T  40562534 tgcccttgttattattttgaaactttt--acttttaagtaatgattactttctttgttctactacaaacttttacatggagaccacaaagagtatttata 40562631  T
Q  228 aggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||| | ||||||| |||||| |||| |||||| ||||||||||    
T  40562632 aggggtaaatttatcaaattctgcttaaaaatatgagaatgtcaagtatt 40562681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 38817945 - 38817827
Alignment:
Q  159 ttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaa 258  Q
    ||||||||||| ||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||    
T  38817945 ttttaagtaattattactttctttgtttcactacaaacttttacatggggaccacaaaaagtatttataaggggtaaatttatcaaattttgcttagaaa 38817846  T
Q  259 tctgagaaggtcaagtatt 277  Q
    | |||||| ||||| ||||    
T  38817845 tttgagaaagtcaaatatt 38817827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 269
Target Start/End: Original strand, 9129491 - 9129641
Alignment:
Q  117 ttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaa 216  Q
    ||||||| | ||| ||||||  ||||||| |||||||  |||||||||||||||||||||||||||||||| ||||||| ||| |||||| || ||||||    
T  9129491 ttttactcaattgtccttgttattatttttaaacttt--cacttttaagtaatgattactttctttgttccactacaaaattttacatggagaccacaaa 9129588  T
Q  217 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggt 269  Q
    || |||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  9129589 aaatatttataaggggtaaatttatcaaattctgcttaaaaatctgagaaggt 9129641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 47603744 - 47603809
Alignment:
Q  201 acatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaa 266  Q
    |||||| |||||| ||||  ||||||||||||||||  ||||||||| |||||| |||| ||||||    
T  47603744 acatggagatcaccaaaaacatttataaggggtaaacttgtcaaattctgcttaaaaatttgagaa 47603809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 277
Target Start/End: Original strand, 28541580 - 28541834
Alignment:
Q  23 aatttaatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttac 122  Q
    |||||| ||| ||||||||| || ||||| |||| ||||||| ||||| ||||| |||       |||||||||||||| ||| ||||||||||||||||    
T  28541580 aatttagtactccctccgtccctaaataagtgacctatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttac 28541679  T
Q  123 tgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtat 222  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  28541680 tgggttgcccttgtcattattttgaaactttttcacttttaagtaatgattattttttttgttccactacaaactttaacatggggaccacaaaaagtat 28541779  T
Q  223 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28541780 ttataaggggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtatt 28541834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 45 - 277
Target Start/End: Complemental strand, 29182876 - 29182644
Alignment:
Q  45 tgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattt 144  Q
    ||||||| |||||||||||| ||||||||||| |||        ||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||    
T  29182876 tgaataagtgacatatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtcattattt 29182777  T
Q  145 tgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaa 244  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||    
T  29182776 tgaaactttttcacttttaagtaatgattattttctttgttccactacaaactttaacatagggaccacaaaatgtatttataagaggtaaatctgtcaa 29182677  T
Q  245 attttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||| |||||||||||||||||||||||||    
T  29182676 attttgcctagaaatctgagaaggtcaagtatt 29182644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 30736715 - 30736472
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    |||||||||||| ||||  |||| ||||| |  |||||||||| |||       |||||||||||||| ||| ||| ||||| ||||||||| ||| |||    
T  30736715 ccctccgtctctcaatacttgacctatttaactatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattgtcct 30736616  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30736615 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggattacaaaaagtatttataaggggt 30736516  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  30736515 aaatctgtcaaattttgcttagaaatctgagaagatcaaatatt 30736472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 16436071 - 16435832
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| |||| ||||||| ||||||||||| |||       |||||||||||||| |||    ||||||||||||||||||||||||    
T  16436071 ccctccgtccctgaataagtgacctatttgagcatttcacacagattaagaaaagtgtaaagatgaaagaaa----gtgatacttttactgagttgccct 16435976  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||| |||||    
T  16435975 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgagaaccacaaaaagtatttatatggggt 16435876  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  16435875 aaatctgtcaaattttccttagaaatttgagaaggtcaagtatt 16435832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 12350568 - 12350325
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    |||||||||  | ||||| |||| ||||||| ||||||||||| |||       |||||||||||||| ||| |||||||| ||||||||||||||||||    
T  12350568 ccctccgtccataaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatgcttttactgagttgccct 12350469  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||| |||||||||||| ||||||||||    
T  12350468 tgtcattattttgaaactttttcacttttaagtaatgattactttctttgttttactacaaactttaacatgaggaccacaaaaagtatatataaggggt 12350369  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  12350368 aaatctgtcaaattttgcttagaaatttgagaaggtcaaatatt 12350325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 88 - 277
Target Start/End: Original strand, 7271136 - 7271325
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7271136 gtgtaaagatgaaagaaatagaatgatatttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttattcc 7271235  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  7271236 actacaaactttaacatggggacaacaaaaagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaaggtcaagtatt 7271325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 34 - 277
Target Start/End: Complemental strand, 1241404 - 1241162
Alignment:
Q  34 ccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgccct 133  Q
    ||||||||| |||||||| | |  ||||| |||||||||||||||||        |||||| |||||| ||| | |||||||||||||||||||||||||    
T  1241404 ccctccgtccctgaataagtaatctatttcatcatttcacacaaattaagaaaaatgtaaaaatgaaagaaagaaagtgatacttttactgagttgccct 1241305  T
Q  134 tgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggt 233  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||| |||    
T  1241304 tgtcattattttgaaactttttca-ttttaagtaatgattactttctttgttccactgcaaactttaatatggggaccacaaaaagtatttataagaggt 1241206  T
Q  234 aaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  1241205 aaatctgtcaaattttgcttagaaatctgagaagttcaagtatt 1241162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 13042213 - 13042025
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||  ||| |||| ||||||||||||||||||| ||||||||||||    
T  13042213 gtgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtcattatttaaaaaatttt-cacttttaagtaatgattattttctttgttcc 13042115  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13042114 actacaaactttaacatagggaccacaaaaagtatttataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtatt 13042025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 91 - 277
Target Start/End: Complemental strand, 1870771 - 1870587
Alignment:
Q  91 taaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctct 190  Q
    ||||||||||| |||  || ||||| ||||||| | ||||||||||  |||||||||| | ||  |||||||||||||||||||||||||||||||| ||    
T  1870771 taaagatgaaagaaagggaatgatatttttactaaattgcccttgttattattttgaagcctt--cacttttaagtaatgattactttctttgttccact 1870674  T
Q  191 acaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  1870673 acaaacttttacatggagatcacaaaaagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggtcaagtatt 1870587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 111 - 277
Target Start/End: Original strand, 31013576 - 31013742
Alignment:
Q  111 tgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggat 210  Q
    ||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||      
T  31013576 tgatatttttactgaattgcccttatcattattttgaaactttttcacttttaagtaatgattattttctttgttctactacaaactttaatatgggggc 31013675  T
Q  211 cacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    |||||||| |||||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||    
T  31013676 cacaaaaaatatttataagggataaatccgtcaaattctgcttagaaatctgagaagatcaagtatt 31013742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 53 - 277
Target Start/End: Complemental strand, 13210618 - 13210397
Alignment:
Q  53 tgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactt 152  Q
    ||||||| |||| ||||||||||| |||       |||||||||||||| ||| ||| ||||  ||||||||| | ||||||||  | ||||||||||||    
T  13210618 tgacatacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgattattttactgaatcgcccttgttat-attttgaaactt 13210520  T
Q  153 tttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgct 252  Q
    |  |||||||||||||  ||||||||||||||||| ||||||||||| |||||| || |||||||| ||||||||| |||||||| ||||||||| ||||    
T  13210519 t--cacttttaagtaagaattactttctttgttccactacaaacttttacatggagaccacaaaaaatatttataatgggtaaatttgtcaaattctgct 13210422  T
Q  253 tagaaatctgagaaggtcaagtatt 277  Q
    || |||| |||||||||||||||||    
T  13210421 taaaaatttgagaaggtcaagtatt 13210397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 31833747 - 31833811
Alignment:
Q  212 acaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtat 276  Q
    ||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||||||||||    
T  31833747 acaaaaagtatttttaagggataaatttgtcaaattatgcttaaaaatctgagaaggtcaagtat 31833811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 31833649 - 31833751
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| | | ||||| ||||||| | |||||||| |   ||||||||||| ||  || |||||||||||||||| ||||||||||||    
T  31833649 gtgtaaagatgaaagaaaaataatgatatttttactaaattgcccttat---tattttgaaacctt--catttttaagtaatgattattttctttgttcc 31833743  T
Q  188 tctacaaa 195  Q
     |||||||    
T  31833744 actacaaa 31833751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 27 - 277
Target Start/End: Original strand, 10014 - 10264
Alignment:
Q  27 taatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgag 126  Q
    |||||| |||||| || || ||||| |||| ||||||| ||||||||||| |||       |||||||||| ||| ||| ||||||||| ||||||||||    
T  10014 taatactccctccatcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgag 10113  T
Q  127 ttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttat 226  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||    
T  10114 ttgcccttgttattattttgaaactttttcacttttaagtaatgattactttctttgttccactataaactttaacatggggaccacaaaaagtatttat 10213  T
Q  227 aaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  10214 aagggataaatctgtcaaattttgcttagaaatatgagaaggtcaagtatt 10264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 70054 - 69806
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| || ||||| |||| ||||||| ||||| | ||| |||       |||||||||||||| ||| ||||||||| ||||||||||||    
T  70054 atactccctccgtccctaaataagtgacttatttgaccatttgatacagattaagaaaagtgtaaagatgaaagaaagagagtgataattttactgagtt 69955  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  69954 gtccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaatacggggatcacaaaaagtatttataa 69855  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  69854 gcggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 69806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 4115 - 3867
Alignment:
Q  29 atacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgagtt 128  Q
    |||| ||||||||| |||||||||| |  ||||||| ||||||||||| |||       | |||||||||||| ||| |||| | |||||||||||||||    
T  4115 atactccctccgtccctgaataaataatctatttgaccatttcacacagattaagaaaagggtaaagatgaaaaaaaaagagcgctacttttactgagtt 4016  T
Q  129 gcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtatttataa 228  Q
     |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| | ||||||||||||||||    
T  4015 acccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccattacaaactttaacatgaggaccgcaaaaagtatttataa 3916  T
Q  229 ggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  3915 gaggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 3867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 126 - 277
Target Start/End: Complemental strand, 16561 - 16410
Alignment:
Q  126 gttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatggggatcacaaaaagtattta 225  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  16561 gttgcctttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaactttaacatggggaccacaaaaagtattta 16462  T
Q  226 taaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  16461 taaagggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtatt 16410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 92166 - 92348
Alignment:
Q  27 taatacgccctccgtctctgaataaatgacatatttgatcatttcacacaaattnnnnnnngtgtaaagatgaaataaatagagtgatacttttactgag 126  Q
    |||||| ||||||||  |||||||| |||| ||| ||| ||||||||| | |||       |||||||||||||| ||| ||||||| ||||||||||||    
T  92166 taatactccctccgttcctgaataagtgacctatgtgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgacacttttactgag 92265  T
Q  127 ttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcctctacaaactttaacatgggga 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  92266 ttgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaactttaacatgggga 92348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 1210 - 1032
Alignment:
Q  88 gtgtaaagatgaaataaatagagtgatacttttactgagttgcccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttcc 187  Q
    |||||||||||||| ||| ||| ||||| ||||||||| |||| |||||  |||||||||||| ||  ||||||||||||||||||         |||||    
T  1210 gtgtaaagatgaaagaaagagaatgatatttttactgaattgctcttgttattattttgaaacctt--cacttttaagtaatgatt---------gttcc 1122  T
Q  188 tctacaaactttaacatggggatcacaaaaagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtatt 277  Q
     ||||||||||| |||||| || ||||||||||||||||||||||||||| ||||||||  |||||| |||||||||||| |||||||||    
T  1121 actacaaacttttacatggagaccacaaaaagtatttataaggggtaaatttgtcaaatcctgcttaaaaatctgagaagctcaagtatt 1032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 633 times since January 2019
Visitors: 6130