View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0871_low_5 (Length: 292)

Name: NF0871_low_5
Description: NF0871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0871_low_5
NF0871_low_5
[»] chr6 (3 HSPs)
chr6 (70-292)||(663695-663922)
chr6 (153-292)||(908100-908239)
chr6 (155-199)||(10157995-10158039)
[»] chr2 (1 HSPs)
chr2 (154-205)||(44605137-44605188)
[»] chr7 (1 HSPs)
chr7 (154-202)||(36314628-36314676)
[»] chr1 (1 HSPs)
chr1 (157-205)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 70 - 292
Target Start/End: Complemental strand, 663922 - 663695
Alignment:
Q  70 catatttcaatgtaaccacatgtgttagtgttgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgaga 164  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663922 catatttcaatgtaaccacatgtgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgaga 663823  T
Q  165 aaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaaga 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663822 aaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaaga 663723  T
Q  265 ttttatatacgaacagtttttatggttt 292  Q
    || |||||| ||||| ||||||||||||    
T  663722 ttatatatatgaacaatttttatggttt 663695  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 908100 - 908239
Alignment:
Q  153 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttg 252  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||||||||||||||||||||||| |||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg 908199  T
Q  253 gtgctacaaagattttatatacgaacagtttttatggttt 292  Q
    |||||||||||||| ||||||  ||||  |||||||||||    
T  908200 gtgctacaaagattatatatatcaacaaattttatggttt 908239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  155 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 199  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  154 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 205  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  154 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 202  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  157 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 205  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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