View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_high_16 (Length: 269)
Name: NF0872_high_16
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 15117493 - 15117711
Alignment:
| Q |
30 |
aaaacaaatataatttgatcttannnnnnnatcaaaccatcatcgaacatatcactgtctcaatcaaagacgaatagtactataatcttttgtttacaaa |
129 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| | ||||||| |
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| T |
15117493 |
aaaacaaatataatttgatcttatttttttatcaaaccatcatcgatcatatcactgtctcaatcaaagacgagtagtactataagctttggcttacaaa |
15117592 |
T |
|
| Q |
130 |
gagcgacataatcgttgttaaagtttc--annnnnnnnnnnaaatagctgttcactataggccatatgagacacttccttgcgcatataccaccttattc |
227 |
Q |
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||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
15117593 |
gagcgacataatcgttgttaaagtttcaaatatttttttttaaatatctgttcactataggccatatgagacacttcctcgcgcatata-caccttattc |
15117691 |
T |
|
| Q |
228 |
atcatttagtatttagtcct |
247 |
Q |
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|||||||||||||||||||| |
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| T |
15117692 |
atcatttagtatttagtcct |
15117711 |
T |
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