View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_high_20 (Length: 227)
Name: NF0872_high_20
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_high_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 35922154 - 35922376
Alignment:
| Q |
5 |
cactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcaca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922154 |
cactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcaca |
35922253 |
T |
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| Q |
105 |
gatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgaccaagaaaatgctgcta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922254 |
gatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgaccaagaaaatgctgcta |
35922353 |
T |
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| Q |
205 |
cataagcgcaaatgaatagcacc |
227 |
Q |
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| T |
35922354 |
cataagcgcaaatgaatagcacc |
35922376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 36202889 - 36202672
Alignment:
| Q |
9 |
acaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagata |
108 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
36202889 |
acaaagaaggcaaagaagaggaacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaaggtgaaaagcatgttcacagata |
36202790 |
T |
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| Q |
109 |
cattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgaccaagaaaatgctgctacata |
208 |
Q |
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| T |
36202789 |
cgtttacactttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaatcctgctacgta |
36202690 |
T |
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| Q |
209 |
agcgcaaatgaatagcac |
226 |
Q |
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| T |
36202689 |
aatgcaaatgaagagcac |
36202672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 1238993 - 1239099
Alignment:
| Q |
84 |
aatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggacccc |
183 |
Q |
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|||||||||| |||||| || || ||||||||||||||||| || ||||||| ||| | |||||| || ||||||| ||||||||| ||||||||||||| |
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| T |
1238993 |
aatgtgaaaatcatgttaaccgaaacattgacactttgagccgctgatcgaacctcaagtggaaaaatttcacttggcaccaaccatccaagaggacccc |
1239092 |
T |
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| Q |
184 |
atgacca |
190 |
Q |
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| T |
1239093 |
aagacca |
1239099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 42517612 - 42517718
Alignment:
| Q |
84 |
aatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggacccc |
183 |
Q |
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|||||||||| |||||| ||||| ||||||||||||||||| || ||||| | ||| | ||| || || ||||||| ||||||||| ||||||||||||| |
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| T |
42517612 |
aatgtgaaaatcatgttaacagaaacattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggacccc |
42517711 |
T |
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| Q |
184 |
atgacca |
190 |
Q |
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| T |
42517712 |
aagacca |
42517718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 1356889 - 1356823
Alignment:
| Q |
124 |
cagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgacca |
190 |
Q |
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|||| |||| ||||||||||||||| |||||||||| || |||||||| || |||||||| ||||| |
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| T |
1356889 |
cagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgacca |
1356823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 18233817 - 18234007
Alignment:
| Q |
15 |
aaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattga |
114 |
Q |
| |
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||||| ||||||||||| || ||||||||||||||||| |||| || ||||| ||| |||| | || ||| ||| |||||| ||||| ||||||| |
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| T |
18233817 |
aaggcgaagaagataaataatccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaacagagacattga |
18233916 |
T |
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| Q |
115 |
cactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgaccaagaaaatgctgctac |
205 |
Q |
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||||||||| || || |||| || | ||| || || ||||||| |||||||||||| ||||||||||| ||||| | |||| ||||||| |
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| T |
18233917 |
tactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcctgctac |
18234007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 41971499 - 41971605
Alignment:
| Q |
84 |
aatgtgaaaaacatgttcacagatacattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggacccc |
183 |
Q |
| |
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|||||||||| |||||| || || ||||||||||||||||| || ||||| | ||| | |||||| | ||||||| ||||||||| ||||||||||||| |
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| T |
41971499 |
aatgtgaaaatcatgttaaccgaaacattgacactttgagccgctgatcgcacctcaagtggaaaagtttcacttggcaccaaccatccaagaggacccc |
41971598 |
T |
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| Q |
184 |
atgacca |
190 |
Q |
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| T |
41971599 |
aagacca |
41971605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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