View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0872_high_3 (Length: 455)

Name: NF0872_high_3
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0872_high_3
NF0872_high_3
[»] chr4 (6 HSPs)
chr4 (105-210)||(36083564-36083669)
chr4 (116-190)||(26189465-26189539)
chr4 (137-190)||(25155523-25155576)
chr4 (154-192)||(41955361-41955399)
chr4 (112-190)||(46626814-46626892)
chr4 (137-190)||(5689378-5689430)
[»] chr1 (7 HSPs)
chr1 (117-298)||(9923764-9923944)
chr1 (105-242)||(11910108-11910245)
chr1 (115-242)||(12198628-12198754)
chr1 (115-195)||(41094001-41094081)
chr1 (119-171)||(50970970-50971022)
chr1 (137-195)||(126614-126672)
chr1 (119-187)||(31953353-31953421)
[»] chr7 (5 HSPs)
chr7 (116-295)||(26641075-26641252)
chr7 (154-242)||(1756781-1756869)
chr7 (7-43)||(38325836-38325872)
chr7 (166-232)||(8670933-8670999)
chr7 (154-242)||(10656104-10656192)
[»] chr8 (3 HSPs)
chr8 (142-299)||(26945667-26945823)
chr8 (132-186)||(18983672-18983726)
chr8 (154-225)||(24674578-24674649)
[»] chr6 (6 HSPs)
chr6 (119-195)||(20743062-20743138)
chr6 (137-225)||(11966543-11966631)
chr6 (119-210)||(21098564-21098655)
chr6 (155-232)||(11761425-11761502)
chr6 (154-210)||(21076888-21076944)
chr6 (154-210)||(21077319-21077375)
[»] chr5 (3 HSPs)
chr5 (154-242)||(6132860-6132948)
chr5 (119-208)||(12317886-12317975)
chr5 (144-195)||(15426138-15426189)
[»] chr2 (5 HSPs)
chr2 (123-291)||(9751909-9752076)
chr2 (122-225)||(9011364-9011467)
chr2 (142-187)||(29759794-29759839)
chr2 (169-225)||(13654765-13654821)
chr2 (166-246)||(35531749-35531829)
[»] chr3 (3 HSPs)
chr3 (142-225)||(1319070-1319153)
chr3 (142-248)||(4245765-4245871)
chr3 (155-192)||(38239565-38239602)
[»] scaffold0127 (2 HSPs)
scaffold0127 (154-243)||(28504-28593)
scaffold0127 (154-243)||(35410-35499)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 36083669 - 36083564
Alignment:
Q  105 tgtcgaattaccttaggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaat 204  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||| ||||||||||||||| |||| ||||||||    
T  36083669 tgtccaatttccttaggaaatttccgcaggtgagtttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaat 36083570  T
Q  205 ccttgg 210  Q
    ||||||    
T  36083569 ccttgg 36083564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 26189539 - 26189465
Alignment:
Q  116 cttaggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattac 190  Q
    |||||||||||||| ||||||| || ||||||||||| ||||| ||||||||||||||| ||| |||||||||||    
T  26189539 cttaggaaatttccccaggtgattttcctgcggtttctaaaattctcagaaaacaattacccatgaaggtattac 26189465  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 25155523 - 25155576
Alignment:
Q  137 agttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattac 190  Q
    |||| |||||||||||  |||||||||| ||||||||| |||||||||||||||    
T  25155523 agtttcctgcggtttcttaaatcctcaggaaacaattaaccacgaaggtattac 25155576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 41955399 - 41955361
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacat 192  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  41955399 aaaatcctaagaaaacaattacccacgaaggtattacat 41955361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 46626892 - 46626814
Alignment:
Q  112 ttaccttaggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattac 190  Q
    |||||| |||||||||||||| || |||| |||||||||   ||||||||||  || |||||| ||||||| |||||||    
T  46626892 ttacctgaggaaatttccgcaagtaagtttcctgcggttcataaaatcctcatgaagcaattacccacgaatgtattac 46626814  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 5689430 - 5689378
Alignment:
Q  137 agttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattac 190  Q
    |||| ||||| ||||||||||||||||| ||||||||| ||||| |||||||||    
T  5689430 agtttcctgctgtttcaaaaatcctcaggaaacaattacccacg-aggtattac 5689378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 117 - 298
Target Start/End: Complemental strand, 9923944 - 9923764
Alignment:
Q  117 ttaggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaatt 216  Q
    ||||| ||||||||||||| | || ||||||||| | ||||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||| ||| |    
T  9923944 ttaggcaatttccgcaggtaaatttcctgcggttactaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaaat 9923845  T
Q  217 ctgcaggaaccaggttacctgcggaatattcagtgtattccgcagaaagttccgcaggcaaatctgagagtttctagtagtg 298  Q
    | |||| || |  ||| ||||||||   |||||||||||| |||| || ||||||||| |||| ||||||| |||| |||||    
T  9923844 ccgcagaaaacttgtttcctgcggatatttcagtgtattcagcaggaaattccgcaggaaaat-tgagagtctctaatagtg 9923764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 11910245 - 11910108
Alignment:
Q  105 tgtcgaattaccttaggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaat 204  Q
    |||| |||| ||||||||||||||||||||| |||| |||| |||| | ||||||||||| ||||||||| ||||||||||||||| |||  ||||||||    
T  11910245 tgtccaatttccttaggaaatttccgcaggttagtttcctggggttcctaaaatcctcaggaaacaattagccacgaaggtattacctggtaaccttaat 11910146  T
Q  205 ccttggtaaattctgcaggaaccaggttacctgcggaa 242  Q
    | |||| ||| |||||||||| |||||| | |||||||    
T  11910145 cgttggcaaaatctgcaggaaacaggtttcttgcggaa 11910108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 12198754 - 12198628
Alignment:
Q  115 ccttaggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaa 214  Q
    |||||||| |||||||||||||| || ||| ||||| | ||||||||||| ||||||||| |||| |||||||||| |||| |||||||| ||||| |||    
T  12198754 ccttaggatatttccgcaggtgactttcctacggttactaaaatcctcag-aaacaattacccacaaaggtattacctgggaaccttaattcttggcaaa 12198656  T
Q  215 ttctgcaggaaccaggttacctgcggaa 242  Q
     || ||||||| |||| | |||||||||    
T  12198655 atccgcaggaaacaggattcctgcggaa 12198628  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 41094081 - 41094001
Alignment:
Q  115 ccttaggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatggg 195  Q
    ||||||||||||||| || |  || | |||| |||||| |||||||  || ||||||||| ||||||||||||||||||||    
T  41094081 ccttaggaaatttccacatgaaagattcctgtggtttctaaaatccataggaaacaattacccacgaaggtattacatggg 41094001  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 50971022 - 50970970
Alignment:
Q  119 aggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaa 171  Q
    ||||||||||||||||||| || |||| |||| ||||||||||||| ||||||    
T  50971022 aggaaatttccgcaggtgattttcctgtggttccaaaaatcctcaggaaacaa 50970970  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 126672 - 126614
Alignment:
Q  137 agttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatggg 195  Q
    |||| ||||||||||| |||||| |||| ||||| ||| ||||||||||||||| ||||    
T  126672 agtttcctgcggtttctaaaatcatcaggaaacatttacccacgaaggtattacttggg 126614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 31953353 - 31953421
Alignment:
Q  119 aggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtat 187  Q
    |||||||||| | |||  |||| ||||||||||| ||||||||||| ||| ||||| ||||||| ||||    
T  31953353 aggaaatttcggtaggaaagtttcctgcggtttctaaaatcctcaggaaataattacccacgaaagtat 31953421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 295
Target Start/End: Original strand, 26641075 - 26641252
Alignment:
Q  116 cttaggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaat 215  Q
    ||||||||||||||||||||   || ||||||||||| ||||||||||| |||||||| ||||| |||||||||| |||| |  |||||||||| ||||     
T  26641075 cttaggaaatttccgcaggtacatttcctgcggtttctaaaatcctcaggaaacaatt-tccactaaggtattacctgggaaaattaatccttgataaaa 26641173  T
Q  216 tctgcaggaaccaggttacctgcggaatattcagtgtattccgcagaaagttccgcaggcaaatctgagagtttctagta 295  Q
    || || |||| |||||| |||||||||  |||||| || |||| || || ||||| ||| ||||| | ||||||||||||    
T  26641174 tccgctggaaacaggtttcctgcggaaatttcagtataatccgtaggaaattccggaggaaaatc-gggagtttctagta 26641252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 1756781 - 1756869
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggttacctgcggaa 242  Q
    ||||||||||||||||||||| |||| |||||  |||||||| |||| ||||| ||| |||||| ||||||| || ||| |||||||||    
T  1756781 aaaatcctcagaaaacaattacccacaaaggttatacatgggaacctaaatccatggcaaattccgcaggaaacatgtttcctgcggaa 1756869  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 38325836 - 38325872
Alignment:
Q  7 gggtggaggctctcataagtggttttattcgcaacag 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  38325836 gggtggaggctctcataagtggttttattcgcaacag 38325872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 8670999 - 8670933
Alignment:
Q  166 aaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggtt 232  Q
    ||||||||| | ||||||||||||| |||| |||||||||||||| ||| || ||||||| ||||||    
T  8670999 aaacaattacctacgaaggtattacctgggaaccttaatccttggcaaaatccgcaggaaacaggtt 8670933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 10656104 - 10656192
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggttacctgcggaa 242  Q
    ||||||||||| || |||||||||||||||||||||| |||| | || |||  |||| ||| || ||||||| | |||| |||||||||    
T  10656104 aaaatcctcaggaatcaattatccacgaaggtattacctgggaatctgaataattgggaaaatccgcaggaaaccggtttcctgcggaa 10656192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 26945823 - 26945667
Alignment:
Q  142 cctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggttacctgcgga 241  Q
    ||||||||| | ||||||||||| | ||||||| | ||||||||  ||| |||| |||| |||||||||||||||| | ||||| |||||| |||| |||    
T  26945823 cctgcggttactaaaatcctcaggagacaattaccaacgaaggttatacctgggaacctaaatccttggtaaattccgtaggaaacaggtttcctgtgga 26945724  T
Q  242 atattcagtgtattccgcagaaagttccgcaggcaaatctgagagtttctagtagtgt 299  Q
    || ||||      |||||||| | ||||||||| | || |||||||||||||||||||    
T  26945723 attttcaccaatatccgcagataattccgcaggaatat-tgagagtttctagtagtgt 26945667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 18983672 - 18983726
Alignment:
Q  132 aggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggta 186  Q
    ||||||||| ||||||||| | ||||||||||| ||||||||| |||||||||||    
T  18983672 aggtgagtttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggta 18983726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 24674578 - 24674649
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaa 225  Q
    |||||||| || ||| ||||| ||||||||||||||| |||| |||| ||||||||| ||| || |||||||    
T  24674578 aaaatcctaaggaaataattacccacgaaggtattacctgggaacctcaatccttggcaaaatccgcaggaa 24674649  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 20743138 - 20743062
Alignment:
Q  119 aggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatggg 195  Q
    |||||| |||||||||  | || ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||    
T  20743138 aggaaagttccgcaggaaattttcctgcggtttctaaaatcctcaggaaacaactatccacgaaggtattacctggg 20743062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 11966543 - 11966631
Alignment:
Q  137 agttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaa 225  Q
    |||| ||||||||||| ||||| ||||  ||||| ||| ||||||||||||||  |||| |||| ||||||| | |||||| |||||||    
T  11966543 agtttcctgcggtttcgaaaattctcacgaaacagttacccacgaaggtattagctgggaacctaaatccttagcaaattccgcaggaa 11966631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 21098655 - 21098564
Alignment:
Q  119 aggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttgg 210  Q
    |||||| |||||||||  |||| ||||||||||| ||||||||  | ||||||||| ||||||||||  |||  ||| |||| |||||||||    
T  21098655 aggaaaattccgcaggaaagtttcctgcggtttctaaaatcctatggaaacaattacccacgaaggttataccagggaacctaaatccttgg 21098564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 11761425 - 11761502
Alignment:
Q  155 aaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggtt 232  Q
    ||||||| || ||||||||| ||||||||||||||| | || |||| || |||||| ||| || ||||||| ||||||    
T  11761425 aaatcctaaggaaacaattacccacgaaggtattacctaggaacctaaaaccttggcaaaatccgcaggaaacaggtt 11761502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 21076944 - 21076888
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttgg 210  Q
    ||||||||||| || |||||| ||||||||||||||| |||| |||| |||| ||||    
T  21076944 aaaatcctcaggaatcaattacccacgaaggtattacttgggaacctgaatcattgg 21076888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 21077319 - 21077375
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttgg 210  Q
    ||||||||||| || |||||| ||||||||| ||||| |||| |||| |||||||||    
T  21077319 aaaatcctcaggaatcaattaaccacgaaggcattacctgggaacctgaatccttgg 21077375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 6132948 - 6132860
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggttacctgcggaa 242  Q
    ||||||||||| ||||||||| ||||||||||  ||| |||| |||| |||| ||||||||||| |||| || |||||| |||||||||    
T  6132948 aaaatcctcaggaaacaattacccacgaaggttatacctgggaacctaaatctttggtaaattccgcagaaaacaggtttcctgcggaa 6132860  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 12317886 - 12317975
Alignment:
Q  119 aggaaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatcctt 208  Q
    ||||||||||||||||| |||| ||||| | |   ||||||||||| ||||||||| ||||||||||  ||| |||| |||| |||||||    
T  12317886 aggaaatttccgcaggttagtttcctgcagatcataaaatcctcaggaaacaattacccacgaaggttatacctgggaacctaaatcctt 12317975  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 15426138 - 15426189
Alignment:
Q  144 tgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatggg 195  Q
    |||||||||| |||||||||| ||| ||||| ||||||||||||||| ||||    
T  15426138 tgcggtttcagaaatcctcaggaaataattacccacgaaggtattacctggg 15426189  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 291
Target Start/End: Original strand, 9751909 - 9752076
Alignment:
Q  123 aatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcag 222  Q
    ||||||||||||| |||| ||||| |||    |||||||||  ||||||||| | ||||||||||||| ||| ||||||||||||||| ||| |  ||||    
T  9751909 aatttccgcaggtaagtttcctgcagttcttcaaatcctcatgaaacaattaccaacgaaggtattacctggataccttaatccttggcaaaattcgcag 9752008  T
Q  223 gaaccaggttacctgcggaatattcagtgtattccgcagaaagttccgcaggcaaatctgagagtttct 291  Q
     || ||||||  ||| ||||| |||||| || ||| ||  || ||||||||| ||||| ||||||||||    
T  9752009 aaaacaggttttctgtggaattttcagtttaatccacatgaaattccgcaggaaaatc-gagagtttct 9752076  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 9011364 - 9011467
Alignment:
Q  122 aaatttccgcaggtgagttccctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgca 221  Q
    |||||||||||||   ||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||||  |||| |||| || |||||| ||| ||||||    
T  9011364 aaatttccgcaggaatgtttcctgcagtttctaaaatcctcaggaaataattacccacgaaggtattatctgggaacctaaagccttggcaaaatctgca 9011463  T
Q  222 ggaa 225  Q
    ||||    
T  9011464 ggaa 9011467  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 29759794 - 29759839
Alignment:
Q  142 cctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtat 187  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||    
T  29759794 cctgcggtttcaaaaatcctcaggaaacaattacccaccaaggtat 29759839  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 13654765 - 13654821
Alignment:
Q  169 caattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaa 225  Q
    |||||| ||||||||||||||| |||| |||| ||||||||| ||| || |||||||    
T  13654765 caattacccacgaaggtattacctgggaacctaaatccttggcaaaatccgcaggaa 13654821  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 35531829 - 35531749
Alignment:
Q  166 aaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggttacctgcggaatatt 246  Q
    ||||||||| ||||| || |||||| |||| |||| ||||||||||||| || | ||||| || ||| ||||||| |||||    
T  35531829 aaacaattacccacgcagatattacctgggaacctaaatccttggtaaactccgtaggaaacacgtttcctgcggtatatt 35531749  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 1319070 - 1319153
Alignment:
Q  142 cctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaa 225  Q
    ||||||||| | ||||||||||| ||||||||| ||||||||||||||  |||| |||| ||||||||  |||||| |||||||    
T  1319070 cctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattagctgggaacctgaatccttgacaaattccgcaggaa 1319153  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 4245765 - 4245871
Alignment:
Q  142 cctgcggtttcaaaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggttacctgcgga 241  Q
    ||||||||| | ||||||||||| ||||||||| ||||||||||  ||| |||  || | ||||||||||||| || ||||||| |||||  ||||||||    
T  4245765 cctgcggttactaaaatcctcaggaaacaattacccacgaaggttatacctggaaacttaaatccttggtaaaatccgcaggaaacaggtgtcctgcgga 4245864  T
Q  242 atattca 248  Q
    || ||||    
T  4245865 attttca 4245871  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 38239602 - 38239565
Alignment:
Q  155 aaatcctcagaaaacaattatccacgaaggtattacat 192  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  38239602 aaatcctaagaaaacaattacccacgaaggtattacat 38239565  T

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Target: scaffold0127 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 28504 - 28593
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggttacctgcggaat 243  Q
    ||||||||||| || ||||||  |||||||||||||| |||| |||| ||||||||| ||| || ||| ||| | | || ||||||||||    
T  28504 aaaatcctcaggaatcaattacacacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcggaat 28593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 35410 - 35499
Alignment:
Q  154 aaaatcctcagaaaacaattatccacgaaggtattacatgggtaccttaatccttggtaaattctgcaggaaccaggttacctgcggaat 243  Q
    ||||||||||| || ||||||  |||||||||||||| |||| |||| ||||||||| ||| || ||| ||| | | || ||||||||||    
T  35410 aaaatcctcaggaatcaattacacacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcggaat 35499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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