View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_high_5 (Length: 431)
Name: NF0872_high_5
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35922766 - 35922561
Alignment:
| Q |
1 |
caatgttataatgttttatgcacctgtgctatttagttctgttgggtttaaggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922766 |
caatgttataatgttttatgcacctgtgctatttagttctgttgggtttgaggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgct |
35922667 |
T |
|
| Q |
101 |
tttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggtcttcaaatgctcatttgtcaggtaactatgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35922666 |
tttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggccttcaaatgctcatttgtcaggtaactatgt |
35922567 |
T |
|
| Q |
201 |
tgtgta |
206 |
Q |
| |
|
|||||| |
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| T |
35922566 |
tgtgta |
35922561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 276 - 422
Target Start/End: Complemental strand, 35922485 - 35922339
Alignment:
| Q |
276 |
ccaactatatttgttgatgtgcaaagattggagttgctgcatctattggagccaaatttggaattgatggaaaccctggtgagttaccaaagtggtatgc |
375 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922485 |
ccaactatatttgttgatgtgcaaagattggagttgctgcatctattggagccaaatttggaattgatggaaaccctggtgagttaccaaagtggtatgc |
35922386 |
T |
|
| Q |
376 |
aattgttgtggtgctattcatttgcgcttatgtagcagcatattctt |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35922385 |
aattgttgtggtgctattcatttgcgcttatgtagcagcattttctt |
35922339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 36202292 - 36202486
Alignment:
| Q |
1 |
caatgttataatgttttatgcacctgtgctatttagttctgttgggtttaaggatgatgctgcccttatgtcatctgtgataactggcgttgttaatgct |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||| | |||||||| |||| || || || |||||||||| | |
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| T |
36202292 |
caatgttatcatgttttatgcacctgtgctatttaattccattgggtttaaggacgatgcttcacttatgtcggctgtcatcaccggtgttgttaatgtt |
36202391 |
T |
|
| Q |
101 |
tttggtaccattatctcaatttttggagttgatagattgggtaggagagccctttttcttgaaggtggtcttcaaatgctcatttgtcaggtaac |
195 |
Q |
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||| ||| | ||||||||| ||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||| || |||||||| |
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| T |
36202392 |
gttgctacttgtgtctcaatttatggagttgataagtggggtaggagagcccttttccttgaaggtggtgctcaaatgctcatatgccaggtaac |
36202486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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