View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_high_6 (Length: 421)
Name: NF0872_high_6
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 35741551 - 35741303
Alignment:
| Q |
30 |
gttagagcatatagaatttctcagcatgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaaggacacttacttttatagtttgtcctg |
129 |
Q |
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| T |
35741551 |
gttagagcatatagaatttctcagcatgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaaggactcttacttttatagtttgtcctg |
35741452 |
T |
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| Q |
130 |
gttcaaagagtttagatgcacatagaatttcacaagacttgttacggatggaacgagcgtcacaaagagcacatgttgagttccttcttactgatgaatt |
229 |
Q |
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| T |
35741451 |
gttcaaagagtttagatgcacatagaatttcacaagacttgttacggatggaacgagcgtcacaaagagcacatgttgagtttcttcttactgatgaatt |
35741352 |
T |
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| Q |
230 |
agagaatgtgggtatttgaagatgtggtgaaagtgaagtgaatgtattg |
278 |
Q |
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| T |
35741351 |
agagaatgtgggtatttgaagatgtggtgaaagtgaagtgaatgtattg |
35741303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 334 - 411
Target Start/End: Complemental strand, 35741297 - 35741220
Alignment:
| Q |
334 |
ctgtttgtttggtattatgtggccattgtttgtaatagtttgtgagttgggaattagtgtactcgtttactttctctg |
411 |
Q |
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| T |
35741297 |
ctgtttgtttggtattatgtggccattgtttgtaatagtttgtgaattgggaattagtgtactcgtttactttctctg |
35741220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 35747946 - 35747793
Alignment:
| Q |
47 |
ttctcagcatgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaaggacacttacttttatagtttgtcctggttcaaagagtttagat |
146 |
Q |
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| T |
35747946 |
ttctcagcatgcaatgagtttgatacggttcatacttgcaaattctacatcattaaggactcttacttttaaagttgctcctagttcta----------- |
35747858 |
T |
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| Q |
147 |
gcacatagaatttcacaagacttgttacggatggaacgagcgtcacaaagagcacatgttgagttccttct |
217 |
Q |
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| T |
35747857 |
------agaatttcacaagacttgttaaggatggaacgagcatcacaaagagcacatgttgaattccttct |
35747793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 35737340 - 35737291
Alignment:
| Q |
53 |
gcatgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaa |
102 |
Q |
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| T |
35737340 |
gcatgcaatgagtttgagacggttcatacttgcaaattccacatcgttaa |
35737291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 35746106 - 35746054
Alignment:
| Q |
59 |
aatgagtttgatacgtttcatacttgcaaattctacatcgttaaggacactta |
111 |
Q |
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| T |
35746106 |
aatgagtttgatacggttcatacttgtaaattccacatcattaaagactctta |
35746054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 10863685 - 10863745
Alignment:
| Q |
156 |
atttcacaagacttgttacggatggaacgagcgtcacaaagagcacatgttgagttccttc |
216 |
Q |
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|||||||||||||||||| |||||||| |||| |||||||||||||| ||||| ||||||| |
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| T |
10863685 |
atttcacaagacttgttaaggatggaaagagcatcacaaagagcacaagttgaattccttc |
10863745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 10863576 - 10863643
Alignment:
| Q |
55 |
atgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaaggacacttacttttatagtt |
122 |
Q |
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||||||||||||||||||| ||||||||||||||||| | || |||| ||| |||||||||| |||| |
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| T |
10863576 |
atgcaatgagtttgatacggttcatacttgcaaattcctcgtcattaaagactcttacttttaaagtt |
10863643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 10904622 - 10904670
Alignment:
| Q |
54 |
catgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaa |
102 |
Q |
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| T |
10904622 |
catgcaatgagtttgatacggttcatacttggaaattcctcatcgttaa |
10904670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 10904732 - 10904774
Alignment:
| Q |
156 |
atttcacaagacttgttacggatggaacgagcgtcacaaagag |
198 |
Q |
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| T |
10904732 |
atttcacaagacttgttaaggatggaaagagcatcacaaagag |
10904774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 16866589 - 16866642
Alignment:
| Q |
60 |
atgagtttgatacgtttcatacttgcaaattctacatcgttaaggacacttact |
113 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| | ||| |||||| |
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| T |
16866589 |
atgagtttgattcgtttcatacttgcaaattcctcatcgttgaagactcttact |
16866642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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