View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_high_7 (Length: 400)
Name: NF0872_high_7
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 55 - 237
Target Start/End: Original strand, 56295779 - 56295960
Alignment:
| Q |
55 |
actaattaaaagaatgcagaattttattaattgaatttcatagtttatcccaaattcatttattagtagtaatttgatggtttgatacaaaata-tattt |
153 |
Q |
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| T |
56295779 |
actaattaaaagaatgcagaattttattcattgaatttcatagtttatcccaaattcatttattagtagtggtttgatggtttgatacaaaatactatat |
56295878 |
T |
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| Q |
154 |
ggtttaaggaatgcagagatatacttagaatattaaaaatggtgaatttttaaaatgagttcctaagtgggtctacgtgtacat |
237 |
Q |
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| T |
56295879 |
--tttaaggaatgcagagatatacttagaatataaaaaatggtgaatttttaaaatgagttcctaagtgggtctacgtgtacat |
56295960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 56296011 - 56296088
Alignment:
| Q |
288 |
acactctcaaaaccaacacatcattatatttcaacagtaatgtatatgttttctaccaatgactttagctataattat |
365 |
Q |
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| T |
56296011 |
acactctcaaaaccaacacatcattatatttcaacagtaatgtatattttttctaccaatgactttagctataattat |
56296088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 17917486 - 17917393
Alignment:
| Q |
55 |
actaattaaaagaatgcagaattttattaattgaatttcatagtttatcccaaattcatttattagtagtaatttgatggtttgatacaaaata |
148 |
Q |
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| T |
17917486 |
actaattaaaagaatgcagaattttattcattgaatttcatagtttatcccaaattcatttattagtagtagtttgatggtttgatacaaaata |
17917393 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 36228995 - 36229088
Alignment:
| Q |
55 |
actaattaaaagaatgcagaattttattaattgaatttcatagtttatcccaaattcatttattagtagtaatttgatggtttgatacaaaata |
148 |
Q |
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| T |
36228995 |
actaattaaaagaatgcataattttattcattgaatttcatagtttatcccaaattcatttattagtagtagtttgatggtttgatacaaaata |
36229088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 32318820 - 32318909
Alignment:
| Q |
60 |
ttaaaagaatgcagaattttattaattgaatttcatagtttatcccaaattca-tttattagtagtaatttgatggtttgatacaaaata |
148 |
Q |
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||||||||||||||||||||||| || |||||||||||||||| |||||||| ||| ||||||||| ||| ||| |||||||||||||| |
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| T |
32318820 |
ttaaaagaatgcagaattttattcatcaaatttcatagtttatctcaaattcatttttttagtagtagttttatgctttgatacaaaata |
32318909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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