View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_low_1 (Length: 630)
Name: NF0872_low_1
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 538
Target Start/End: Complemental strand, 30253010 - 30252482
Alignment:
| Q |
13 |
aatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaaagcagca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30253010 |
aatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctatgagatcatatccaaagcagca |
30252911 |
T |
|
| Q |
113 |
tcaatggagattcccaacnnnnnnnnggttaaatgaaacaatctatggagaaagagagggacaaatgaaggtttcaatgccattatctaggagtttcatt |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30252910 |
tcaatggagattcccaacaaaaaaaaggttaaatgaaacaatctgtggagaaagagagggacaaatgaaggtttcaatgccattatctaggagtttcatt |
30252811 |
T |
|
| Q |
213 |
attaatttgtcaagtttagtttcagcaataaaaagggaacttaaattttaatttctttgaataataat---tcattatttatttaggaaatttgttggaa |
309 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30252810 |
attaatttgtcaagtttagtttcagaaataaaaagggaacttaaattttaatttctttgaataataataattcattatttatttaggaaatttgttggaa |
30252711 |
T |
|
| Q |
310 |
tatttataatataccccaattggaggaatgttatgtatattaagattttgtggactaagtttggaagttcatagtctaaaccacttggaatttcacaaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30252710 |
tatttataatataccccaattggaggaatgttatgtatattaagattttgtggactaagtttggaagttcatagtctaaaccacttggaatttcacaaca |
30252611 |
T |
|
| Q |
410 |
ccttatttataagctattttagtctcacaattttatccaatgttggcttataatattgcattaactagtagtctgtttttaattggcttgtcctcaaggc |
509 |
Q |
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| T |
30252610 |
ccttatttataagctattttagtctcacaattttatccaatgttggcttataatattgcattaactagtagtctgtttttaattggcttgtcctcaaggc |
30252511 |
T |
|
| Q |
510 |
tggggttgtgcagctacctgtatggctgt |
538 |
Q |
| |
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| T |
30252510 |
tggggttgtgcagctacctgtatggctgt |
30252482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 30259462 - 30259039
Alignment:
| Q |
13 |
aatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaaagcagca |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30259462 |
aatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctatgagatcatatccaaagcagca |
30259363 |
T |
|
| Q |
113 |
tcaatggagattcccaacnnnnnnnnggttaaatgaaacaatctatggagaaagagagggacaaatgaaggtttcaatgccattatctaggagtttcatt |
212 |
Q |
| |
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|||||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30259362 |
tcaatggagattcccaacaaaaaaaagattaaatgaa-caatctatggagaaagagagggaccaatgaaggtttcaatgccattatctaggagtttcatt |
30259264 |
T |
|
| Q |
213 |
attaatttgtcaagtttagtttcagcaataaaaagggaacttaaattttaatttctttgaataataattcattatttatttaggaaatttgttggaatat |
312 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30259263 |
attaatttgtcaagtttggtttcagcaataaaaagggagcttaaattttaatttctttgaataataattcattattta----------ttgttggaatat |
30259174 |
T |
|
| Q |
313 |
ttataatataccccaattggaggaatgt----tatgtatattaagattttgtggactaagtttggaagttcatagtctaaaccacttggaatttcacaac |
408 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30259173 |
ttataatataccccaattggaggaatgttatgtatgtatattaagtttttgtggactaagtttggaagttcacggtctaaaccacttggaatttcacaac |
30259074 |
T |
|
| Q |
409 |
accttatttataagctattttagtctcacaatttt |
443 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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| T |
30259073 |
accttatttataagctattttagtatcacaatttt |
30259039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 30268516 - 30268404
Alignment:
| Q |
13 |
aatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaaagcagca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| || ||||| ||||| ||||||| ||||||||||||| |||||||||| ||| |
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| T |
30268516 |
aatattaagaattactttgaaaacacagaaaggttttattgatgagcaaaagtttaagttttgcatggtaagagcctttgaggtcatatccaa---ggca |
30268420 |
T |
|
| Q |
113 |
tcaatggagattccca |
128 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
30268419 |
tcaatggagattccca |
30268404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 30283672 - 30283784
Alignment:
| Q |
13 |
aatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaaagcagca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| || ||||| ||||| ||||||| ||||||||||||| |||||||||| ||| |
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| T |
30283672 |
aatattaagaattactttgaaaacacagaaaggttttattgatgagcaaaagtttaagttttgcatggtaagagcctttgaggtcatatccaa---ggca |
30283768 |
T |
|
| Q |
113 |
tcaatggagattccca |
128 |
Q |
| |
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|||||||||||||||| |
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| T |
30283769 |
tcaatggagattccca |
30283784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 30302204 - 30302112
Alignment:
| Q |
13 |
aatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
30302204 |
aatattaagaattactttgaaaacacaaaaagggtttattgatgagcagaagttcaagttgtgcatagtaagagcctttgaggtcatatccaa |
30302112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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