View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0872_low_11 (Length: 382)

Name: NF0872_low_11
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0872_low_11
NF0872_low_11
[»] chr2 (1 HSPs)
chr2 (1-374)||(41830545-41830918)
[»] chr4 (2 HSPs)
chr4 (63-161)||(24358388-24358486)
chr4 (71-131)||(43560213-43560273)
[»] chr8 (1 HSPs)
chr8 (88-145)||(5948210-5948267)
[»] chr1 (4 HSPs)
chr1 (61-127)||(38720042-38720108)
chr1 (64-132)||(37963057-37963125)
chr1 (71-133)||(51044672-51044734)
chr1 (75-119)||(16127080-16127124)
[»] chr3 (1 HSPs)
chr3 (71-133)||(34626446-34626508)


Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 41830918 - 41830545
Alignment:
Q  1 aaattaattaagttcttctataatatgcattgacctgacatttgaatacatttgactttttgaagatggtctcaaatagcagcacgattaccgggaagaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830918 aaattaattaacttcttctataatatgcattgacctgacatttgaatacatttgactttttgaagatggtctcaaatagcagcacgattaccgggaagaa 41830819  T
Q  101 ctgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtcttcttcaacctcaccaaatccaagtgatgagtcctcacc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830818 ccgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtcttcttcaacctcaccaaatccaagtgatgagtcctcacc 41830719  T
Q  201 tgaacctaacaaagatttcaatatacaacaagggtcctatatttctatacaacatgcaaattacaacaactacatgagtatgcctatgttcacttcatca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41830718 tgaacctaacaaagatttcaatatacaacaagggtcctatatttctatacaacatgcaaattacaacagctacatgagtatgcctatgttcacttcatca 41830619  T
Q  301 tcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacacgttgcctatgat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41830618 tcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacacgttgcctgtgat 41830545  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 24358486 - 24358388
Alignment:
Q  63 aagatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtc 161  Q
    ||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| |||||| ||||    
T  24358486 aagatggtctcaaattgcggcacgcttacccggaagaacagacaatgaaatcaagaacttttggaattcaacaataaagaaaagactcaagaacatgtc 24358388  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 43560273 - 43560213
Alignment:
Q  71 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattc 131  Q
    ||||||||||||||| |||||| || ||||| || |||||||| |||||||| ||||||||    
T  43560273 ctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattc 43560213  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 5948267 - 5948210
Alignment:
Q  88 ttaccgggaagaactgacaatgaaataaaaaacttttggaattcaactataaagaaaa 145  Q
    ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||    
T  5948267 ttacctggaagaacagataatgagataaaaaacttttggaattcaaccataaagaaaa 5948210  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 38720042 - 38720108
Alignment:
Q  61 tgaagatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttgga 127  Q
    ||||| |||||| ||||||| | || ||||||||||||||| |||||||||||||| |||| |||||    
T  38720042 tgaaggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattgga 38720108  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 37963057 - 37963125
Alignment:
Q  64 agatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattca 132  Q
    ||||||||||| || ||||||| |||||| ||||||||||||||||| || |||||  | |||||||||    
T  37963057 agatggtctcagattgcagcacaattaccaggaagaactgacaatgagattaaaaatctatggaattca 37963125  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 51044672 - 51044734
Alignment:
Q  71 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaa 133  Q
    ||||||| ||| ||| |||||| || ||||| || ||||| ||||||||||||||||||||||    
T  51044672 ctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaa 51044734  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 16127124 - 16127080
Alignment:
Q  75 aatagcagcacgattaccgggaagaactgacaatgaaataaaaaa 119  Q
    ||||||||||  |||||| |||||||| |||||||||||||||||    
T  16127124 aatagcagcaaaattacctggaagaacagacaatgaaataaaaaa 16127080  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 34626508 - 34626446
Alignment:
Q  71 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaa 133  Q
    ||||||| ||||||| |||||| || ||||| || ||||| || |||||||||||||||||||    
T  34626508 ctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaa 34626446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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