View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_low_12 (Length: 364)
Name: NF0872_low_12
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 354
Target Start/End: Complemental strand, 35923012 - 35922688
Alignment:
| Q |
30 |
tggatcaatagtccttccggacacccctaattcaatgatcgaacgtggtaatcgagatggagccaaggctcatcttaagcgaatccgtggagtggaagat |
129 |
Q |
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| T |
35923012 |
tggatcaatagtccttccggacacccctaattcaatgatcgaacgtggtgatcgagatggagccaaggttcatcttaagcgaatccgtggagtggaagat |
35922913 |
T |
|
| Q |
130 |
gttgatgaagagttcaatgatcttgtagcagctagtgaagcatgcatgcaagtgaaaaacccttggaggaatttgttgcaaaggaaatataggcctcaac |
229 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922912 |
gttgatgaagagttcaatgaccttgtagcagctagtgaagcatgcatgcaagtgaaaaacccttggaggaatttgttgcaaaggaaatataggcctcaac |
35922813 |
T |
|
| Q |
230 |
tttctatggccatattgattccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttaagga |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35922812 |
tttctatggccatattgattccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttgagga |
35922713 |
T |
|
| Q |
330 |
tgatgctgcccttatgtcatctgtg |
354 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
35922712 |
tgatgctgcccttatgtcatctgtg |
35922688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 36202046 - 36202363
Alignment:
| Q |
30 |
tggatcaatagtccttccggacacccctaattcaatgatcgaacgtggtaatcgagatggagccaaggctcatcttaagcgaatccgtggagtggaagat |
129 |
Q |
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||||||| |||||||||| ||||||||||| |||||||||||||||||| |||| |||||||| || ||||| |||||| |||| || || | |||||| |
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| T |
36202046 |
tggatcattagtccttcccgacacccctaactcaatgatcgaacgtggtgatcgcgatggagctaaagctcaacttaagagaattcgcggtattgaagat |
36202145 |
T |
|
| Q |
130 |
gttgatgaagagttcaatgatcttgtagcagctagtgaagcatgcatgcaagtgaaaaacccttggaggaatttgttgcaaaggaaatataggcctcaac |
229 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||| || | |||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| | |
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|
| T |
36202146 |
gttgatgaagagtttaatgaccttgtagcagctagtgaggcctcaatgcaagttgaaaacccttggagaaatttgttgcagaggaaatatagacctcagc |
36202245 |
T |
|
| Q |
230 |
tttctatggccatattgattccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgtgctatttagttctgttgggtttaagga |
329 |
Q |
| |
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|| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
36202246 |
ttactatggctgtattgataccattcttccaacaatttacaggcatcaatgttatcatgttttatgcacctgtgctatttaattccattgggtttaagga |
36202345 |
T |
|
| Q |
330 |
tgatgctgcccttatgtc |
347 |
Q |
| |
|
|||||| | |||||||| |
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|
| T |
36202346 |
cgatgcttcacttatgtc |
36202363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 35490263 - 35490208
Alignment:
| Q |
247 |
attccattcttccagcaatttacaggaatcaatgttataatgttttatgcacctgt |
302 |
Q |
| |
|
|||||||||||||| ||| | || |||||||||||||| ||||||||||||||||| |
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|
| T |
35490263 |
attccattcttccaacaactcaccggaatcaatgttatcatgttttatgcacctgt |
35490208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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