View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_low_16 (Length: 312)
Name: NF0872_low_16
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 41325359 - 41325527
Alignment:
| Q |
22 |
catcatctttatcctcattgttcttcatgtactattcctaagcatgtaaaatgcagtgaaatgctacaaaaacttgatacgaaacca---agacatgcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
41325359 |
catcatctttatcctcattgttcttcatgtactattcctaagcatgtaaaatgcagtgaaatgctacaaaaacttgatacgaaatcaattagacatgcat |
41325458 |
T |
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| Q |
119 |
tctttttggattttaattggtatatatttacaatagtcaattgtcatcaatcataaatggtacttcaac |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41325459 |
tctttttggattttaattggtatatatttacaatagtcaattgtcatcaatcataaatggtacttcaac |
41325527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 47248378 - 47248215
Alignment:
| Q |
22 |
catcatctttatcctcattgttcttcatgtactattcctaagcatgtaaaatgcagtgaaatgctacaaaaacttgatacgaaaccaagacatgcattct |
121 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47248378 |
catcatctttatcctcattgttcttcatgtaatattcctaagcatgtaagatgtagtgaaatgctacaaaaacttgctacgaaaccaagacatgcattct |
47248279 |
T |
|
| Q |
122 |
ttttggattttaattggtatatatttacaatagtcaattgtcatcaatcataaatggtacttcaa |
186 |
Q |
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|||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| |
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| T |
47248278 |
tttttgattttaattggtatacatttactat-gtcaattgtcatcaatcataaatggtacttcaa |
47248215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 41325588 - 41325625
Alignment:
| Q |
248 |
aacacaattggtagaccaagtaactaactaactaaaac |
285 |
Q |
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| T |
41325588 |
aacacaattggtagaccaagtaactaactaactaaaac |
41325625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 47248151 - 47248114
Alignment:
| Q |
248 |
aacacaattggtagaccaagtaactaactaactaaaac |
285 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
47248151 |
aacacaattggtagaccaactaactaactaactaaaac |
47248114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 42311037 - 42311201
Alignment:
| Q |
22 |
catcatctttatcctcattgttcttcatgtactattcctaagcatgtaaaatgcagtgaaatgctacaaaaacttgatacgaaaccaagacatgcattct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42311037 |
catcatctttatcctcattgttcttcatgtactattcctaagcatgcaagatgcattgaaatgctacaaaaacttgctacgaaaccaagacatgcattct |
42311136 |
T |
|
| Q |
122 |
ttttggattttaattggtatatatttacaatagtcaattgtcatcaatcataaatggtacttcaa |
186 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42311137 |
ttttggattttaattggtatacatttacaatagtcaattgtcatcaatcataaatggtacttcaa |
42311201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 42311264 - 42311298
Alignment:
| Q |
248 |
aacacaattggtagaccaagtaactaactaactaa |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
42311264 |
aacacaattggtagaccaagtaactaactaactaa |
42311298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 20906240 - 20906404
Alignment:
| Q |
22 |
catcatctttatcctcattgttcttcatgtactattcctaagcatgtaaaatgcagtgaaatgctacaaaaacttgatacgaaaccaagacatgcattct |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
20906240 |
catcatctttatactcattgttcttcatgtactatttctaagcatgtaagatgaagtgaaatgctacaaaa-cttgctacgaaaccaagacatgcattct |
20906338 |
T |
|
| Q |
122 |
ttttggattttaattggtatatatttacaatagtcaattgtcatcaatcataaatggtacttcaac |
187 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20906339 |
ttttggattttaattggtatacatttacaatagtcaattgtcatcaatcataaatggtacttcaac |
20906404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 20906466 - 20906503
Alignment:
| Q |
248 |
aacacaattggtagaccaagtaactaactaactaaaac |
285 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |
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| T |
20906466 |
aacacaattggtagaccaagtaactaactaactaaaac |
20906503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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