View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_low_18 (Length: 300)
Name: NF0872_low_18
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 4289747 - 4290023
Alignment:
| Q |
2 |
gcaaagaaaggggtgattctaattcagaaacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaa |
101 |
Q |
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||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289747 |
gcaaacaaaggggtgatactaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaa |
4289846 |
T |
|
| Q |
102 |
aacagcatgatgtgaagtaatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaag |
192 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
4289847 |
aacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaatggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaag |
4289946 |
T |
|
| Q |
193 |
ttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
269 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
4289947 |
ttaggtaaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattgaaatcagcatgagattc |
4290023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 4260430 - 4260154
Alignment:
| Q |
2 |
gcaaagaaaggggtgattctaattcagaaacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaa |
101 |
Q |
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||||| |||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260430 |
gcaaacaaaggggtaatactaattcagatacttcaatttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaa |
4260331 |
T |
|
| Q |
102 |
aacagcatgatgtgaagtaatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaag |
192 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||| |
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| T |
4260330 |
aacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaaaagtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaag |
4260231 |
T |
|
| Q |
193 |
ttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
269 |
Q |
| |
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|||||||||| ||||||||| ||||| ||||| |||||||||||| |||| |||||||||||| ||||||||||||| |
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| T |
4260230 |
ttaggtaaaaaatcatgaatctgtgtagcttcagaaagattcttaccagagaaatgattgaaatcagcatgagattc |
4260154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 4265976 - 4265700
Alignment:
| Q |
2 |
gcaaagaaaggggtgattctaattcagaaacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaa |
101 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265976 |
gcaaacaaaggggtaattctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaa |
4265877 |
T |
|
| Q |
102 |
aacagcatgatgtgaagtaatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaag |
192 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||| |
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| T |
4265876 |
aacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaagagtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaag |
4265777 |
T |
|
| Q |
193 |
ttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
269 |
Q |
| |
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|||||||||||||||||||||||| | ||||| | |||||||||| | || | |||||||||| |||||| |||||| |
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| T |
4265776 |
ttaggtaaaagatcatgaatttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattc |
4265700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 94 - 288
Target Start/End: Original strand, 4285109 - 4285312
Alignment:
| Q |
94 |
ccatctaaaacagcatgatgtgaagtaatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
184 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
|
| Q |
185 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattctgatgtatgtgatga |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattctgaagtatgtgatga |
4285308 |
T |
|
| Q |
285 |
tgtc |
288 |
Q |
| |
|
|||| |
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|
| T |
4285309 |
tgtc |
4285312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 4298331 - 4298607
Alignment:
| Q |
2 |
gcaaagaaaggggtgattctaattcagaaacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaa |
101 |
Q |
| |
|
||||| ||| || ||||||| ||||||| | ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4298331 |
gcaaacaaatggatgattctgattcagatatttcctttccaatatttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaa |
4298430 |
T |
|
| Q |
102 |
aacagcatgatgtgaagtaatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaatattcaag |
192 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
4298431 |
aacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaag |
4298530 |
T |
|
| Q |
193 |
ttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
269 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| |||||||| |||||| || ||||||| ||| || |||||| |
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| T |
4298531 |
ttaggtaaaagatcatgaatttgtgtagcttcagaaggattcttaccagatagataattgaaatcagaatcagattc |
4298607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 4285048 - 4285111
Alignment:
| Q |
2 |
gcaaagaaaggggtgattctaattcagaaacttcattttcaagctttctacataggtaagccca |
65 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4285048 |
gcaaagaaaggggtgattctaattcagaaacttcattttcaagctttctacataggtaagccca |
4285111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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