View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0872_low_2 (Length: 579)

Name: NF0872_low_2
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0872_low_2
NF0872_low_2
[»] chr7 (3 HSPs)
chr7 (190-369)||(16263049-16263231)
chr7 (482-544)||(35347781-35347843)
chr7 (7-39)||(38325836-38325868)
[»] chr4 (3 HSPs)
chr4 (312-367)||(14015900-14015955)
chr4 (312-367)||(15563254-15563309)
chr4 (312-367)||(15575901-15575956)
[»] chr6 (1 HSPs)
chr6 (482-544)||(2274839-2274901)
[»] chr5 (1 HSPs)
chr5 (482-544)||(39346329-39346391)
[»] chr1 (2 HSPs)
chr1 (482-544)||(4012173-4012235)
chr1 (482-531)||(25875860-25875909)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 190 - 369
Target Start/End: Complemental strand, 16263231 - 16263049
Alignment:
Q  190 ccacataattaattatgccaaatctcaatagtgaaactatcatcaaagaaactgacatannnnnnncttaactgt----tggattttgcaggtactgggt 285  Q
    ||||| ||||||||| ||||| ||||  ||||||||||| ||||||||||||| |||||       ||||| |||    ||||  ||||| ||| |||||    
T  16263231 ccacagaattaattaggccaagtctcggtagtgaaactaccatcaaagaaacttacatatttttt-cttaattgtgtgttggaaattgcaagtattgggt 16263133  T
Q  286 gaggatgagaacaatatcaaggtacacatgccccttaaaataaagcaattgcaagagaattgaagctgcttgctgaacatgaca 369  Q
    ||||||||||||||| |||||||| |||||||||| ||  |||||||||||||||| |||||||||||||||||||||||||||    
T  16263132 gaggatgagaacaatgtcaaggtaaacatgcccctgaaggtaaagcaattgcaagaaaattgaagctgcttgctgaacatgaca 16263049  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 544
Target Start/End: Original strand, 35347781 - 35347843
Alignment:
Q  482 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctattatattgttcttcc 544  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||||||    
T  35347781 tctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttcc 35347843  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 38325836 - 38325868
Alignment:
Q  7 gggtggaggctctcataagtggttttattcgca 39  Q
    |||||||||||||||||||||||||||||||||    
T  38325836 gggtggaggctctcataagtggttttattcgca 38325868  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 14015900 - 14015955
Alignment:
Q  312 catgccccttaaaataaagcaattgcaagagaattgaagctgcttgctgaacatga 367  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  14015900 catgcccctgaagataaagcaattgcaagagaattgaagctacttgctgaacatga 14015955  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 15563254 - 15563309
Alignment:
Q  312 catgccccttaaaataaagcaattgcaagagaattgaagctgcttgctgaacatga 367  Q
    ||||||||| || ||||||||||| |||||||||||||||| ||| ||||||||||    
T  15563254 catgcccctgaagataaagcaatttcaagagaattgaagctactttctgaacatga 15563309  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 15575901 - 15575956
Alignment:
Q  312 catgccccttaaaataaagcaattgcaagagaattgaagctgcttgctgaacatga 367  Q
    ||||||||| || ||||||||||| |||||||||||||||| ||| ||||||||||    
T  15575901 catgcccctgaagataaagcaatttcaagagaattgaagctactttctgaacatga 15575956  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 544
Target Start/End: Original strand, 2274839 - 2274901
Alignment:
Q  482 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctattatattgttcttcc 544  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||||||    
T  2274839 tctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttcc 2274901  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 544
Target Start/End: Original strand, 39346329 - 39346391
Alignment:
Q  482 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctattatattgttcttcc 544  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||||||    
T  39346329 tctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttcc 39346391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 544
Target Start/End: Original strand, 4012173 - 4012235
Alignment:
Q  482 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctattatattgttcttcc 544  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||  |||||||||||    
T  4012173 tctgcatgctactgttttgtgtgcaggtgacttttcaaggtgaatctattgcattgttcttcc 4012235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 25875860 - 25875909
Alignment:
Q  482 tctgcatgctactttttcatgtgcaggtgacttttcaaggtgaatctatt 531  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  25875860 tctgcatgctactgtttcgtgtgcaggtgacttttcaaggtgaatctatt 25875909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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