View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0872_low_20 (Length: 286)

Name: NF0872_low_20
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0872_low_20
NF0872_low_20
[»] scaffold0041 (1 HSPs)
scaffold0041 (16-235)||(94634-94853)
[»] chr7 (16 HSPs)
chr7 (16-235)||(40871429-40871648)
chr7 (16-188)||(12623031-12623203)
chr7 (28-219)||(40858157-40858348)
chr7 (18-235)||(17194009-17194225)
chr7 (28-235)||(1031990-1032197)
chr7 (30-235)||(9942731-9942936)
chr7 (77-154)||(8123965-8124042)
chr7 (52-219)||(19324000-19324167)
chr7 (52-219)||(32575245-32575412)
chr7 (52-219)||(29126016-29126183)
chr7 (53-219)||(18299607-18299773)
chr7 (52-219)||(38142015-38142182)
chr7 (52-158)||(15669528-15669634)
chr7 (244-280)||(38325836-38325872)
chr7 (52-219)||(29626689-29626856)
chr7 (19-79)||(9948852-9948912)
[»] chr8 (10 HSPs)
chr8 (16-235)||(13089902-13090121)
chr8 (16-235)||(4034416-4034635)
chr8 (28-219)||(9932233-9932424)
chr8 (28-219)||(25582718-25582909)
chr8 (29-235)||(8444388-8444594)
chr8 (18-235)||(24503820-24504037)
chr8 (39-235)||(45540081-45540277)
chr8 (28-219)||(13780981-13781171)
chr8 (18-97)||(10230232-10230311)
chr8 (33-134)||(15729332-15729433)
[»] chr6 (8 HSPs)
chr6 (16-235)||(12912375-12912594)
chr6 (18-235)||(18972737-18972955)
chr6 (31-235)||(24393670-24393874)
chr6 (18-215)||(6029106-6029303)
chr6 (16-75)||(165423-165482)
chr6 (55-224)||(30987167-30987335)
chr6 (52-184)||(7093733-7093865)
chr6 (64-134)||(8753089-8753159)
[»] chr2 (12 HSPs)
chr2 (18-235)||(11031544-11031761)
chr2 (28-235)||(6764186-6764393)
chr2 (18-235)||(12410553-12410770)
chr2 (18-235)||(12422613-12422830)
chr2 (18-235)||(37647731-37647948)
chr2 (28-236)||(2380758-2380966)
chr2 (28-160)||(3044171-3044303)
chr2 (18-201)||(7901091-7901278)
chr2 (31-152)||(34394621-34394742)
chr2 (31-219)||(27271430-27271609)
chr2 (141-219)||(29739885-29739963)
chr2 (28-100)||(29739968-29740040)
[»] chr4 (14 HSPs)
chr4 (16-235)||(37870773-37870992)
chr4 (24-219)||(47590588-47590783)
chr4 (28-219)||(40850586-40850777)
chr4 (18-235)||(43499063-43499280)
chr4 (28-235)||(9896633-9896840)
chr4 (28-219)||(48640506-48640697)
chr4 (48-219)||(56024817-56024988)
chr4 (18-235)||(42718336-42718553)
chr4 (31-235)||(36651871-36652075)
chr4 (18-235)||(7743338-7743555)
chr4 (30-235)||(39059850-39060055)
chr4 (131-218)||(23106851-23106938)
chr4 (52-219)||(40345944-40346111)
chr4 (55-219)||(50771581-50771745)
[»] chr1 (15 HSPs)
chr1 (16-235)||(34549117-34549336)
chr1 (16-234)||(19228014-19228232)
chr1 (28-219)||(20505417-20505608)
chr1 (28-219)||(26676671-26676862)
chr1 (18-235)||(31911675-31911892)
chr1 (18-235)||(33936193-33936410)
chr1 (28-219)||(33676633-33676824)
chr1 (30-216)||(28756617-28756803)
chr1 (30-219)||(46731841-46732030)
chr1 (31-235)||(4532217-4532421)
chr1 (18-219)||(27007514-27007715)
chr1 (19-175)||(51534596-51534752)
chr1 (28-145)||(52022615-52022732)
chr1 (52-184)||(15759768-15759900)
chr1 (103-139)||(36016712-36016748)
[»] scaffold0074 (1 HSPs)
scaffold0074 (18-235)||(23553-23771)
[»] scaffold0300 (1 HSPs)
scaffold0300 (28-235)||(9343-9550)
[»] chr3 (5 HSPs)
chr3 (28-219)||(10436568-10436759)
chr3 (28-219)||(20406151-20406342)
chr3 (48-226)||(15029846-15030024)
chr3 (64-219)||(53459080-53459235)
chr3 (55-219)||(28432665-28432829)
[»] chr5 (7 HSPs)
chr5 (19-235)||(22639325-22639541)
chr5 (28-219)||(26369072-26369263)
chr5 (40-235)||(19021156-19021351)
chr5 (48-235)||(22580548-22580738)
chr5 (39-99)||(6536979-6537039)
chr5 (52-219)||(25982339-25982506)
chr5 (64-219)||(40973444-40973599)
[»] scaffold0037 (1 HSPs)
scaffold0037 (16-105)||(861-950)
[»] scaffold0432 (1 HSPs)
scaffold0432 (52-219)||(8876-9043)
[»] scaffold0020 (1 HSPs)
scaffold0020 (28-98)||(124327-124397)


Alignment Details
Target: scaffold0041 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 94853 - 94634
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  94853 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttca 94754  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  94753 gccaccagtaagattgaagcttgactttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcaccca 94654  T
Q  216 cacatatgatagccaaataa 235  Q
    |||| |||||||||||||||    
T  94653 cacaaatgatagccaaataa 94634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 40871429 - 40871648
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40871429 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttca 40871528  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40871529 gccaccagtaagattgaagcttgactttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcaccca 40871628  T
Q  216 cacatatgatagccaaataa 235  Q
    |||| |||||||||||||||    
T  40871629 cacaaatgatagccaaataa 40871648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 12623031 - 12623203
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||     
T  12623031 ataagaatgttgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccatcatgaatggtagaagaaaacaaaactaggacgatttgccttcg 12623130  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccg 188  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  12623131 gccacaagtaagattgaagcttgactttatctagcaattgtttaaaagaagcctctttttggtgaaagatccg 12623203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 40858157 - 40858348
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||| |||| ||||||||||| | |||| |||||| | |||||| |||||||||||||||||| |||||| || |||||||| |||||||    
T  40858157 ccctgttacataaaaattcccaagcaaggtagaggatttaaccactaagaatggaaggagaaaacaaaactaggacgattagctttcagccatcagtaag 40858256  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| | |||  ||||| |||||||||||||||||||||||    
T  40858257 attgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacaca 40858348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 17194009 - 17194225
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| |||| |||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||| ||||||||||  ||||||| | ||||||    
T  17194009 aagaaagctaccctattacaaaaatattcccaaacaaggtaaaggattcaaccaccacgaatggtaggagagaacaaaactatgacgattttctttcagc 17194108  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||     ||||||||||||| |||||||| ||||    
T  17194109 caccagtgagattgaagcttaactttatctagcaattgattaaaagaagctttttattggt-aaagatttaagcattcctttcaagtcaaatcactcaca 17194207  T
Q  218 catatgatagccaaataa 235  Q
    || | |||| ||||||||    
T  17194208 cacaagataaccaaataa 17194225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 1032197 - 1031990
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||||||||  |||||||||||||| |||||||||||||||| |||||||||||||||||||    | || || |||||||||||||| |    
T  1032197 ccctgttacataaatattcctaagcaaggtaaatggttcaaccaccatgaatagtaggagaaaacaaaactattgtggttcgctttcagccaccagtatg 1032098  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatag 227  Q
    |||||||||| ||||||||||  ||||||||||| |||||||||||||||||||| || ||  | |||||||||||| | |||||||||||| |  ||||    
T  1032097 attgaagcttaactttatctaataattgattaaaagaagcttctttttggtgaaatattcgagcgttcctttcaagctagatcacccacacacaatatag 1031998  T
Q  228 ccaaataa 235  Q
    ||||||||    
T  1031997 ccaaataa 1031990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 9942731 - 9942936
Alignment:
Q  30 ctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagat 129  Q
    |||||||| ||||||||  ||| |||  ||||| |||||| ||||||||||||||||||||||||||||||  || || || |||||||||||||| |||    
T  9942731 ctgttacataaatattcctaagtaagacaaatggttcaactaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgat 9942830  T
Q  130 tgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagcc 229  Q
    || ||||| |||||||||| |||||||||||| |||||||||||||||||||| || |   |||| ||||||||||| |||||||||||| | ||||| |    
T  9942831 tggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcaagcatttctttcaagccagatcacccacacacaagatagtc 9942930  T
Q  230 aaataa 235  Q
    ||||||    
T  9942931 aaataa 9942936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 8124042 - 8123965
Alignment:
Q  77 aatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaatt 154  Q
    |||||||||||||||||||||||| |||||| || |||| ||||||||||||||||||||| |||||||||| |||||    
T  8124042 aatggtaggagaaaacaaaactaggacgattagctttcaaccaccagtaagattgaagcttaactttatctaacaatt 8123965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 19324167 - 19324000
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| ||| ||||  ||| ||| || || |||||||||| ||| |||||||| || | ||||||||| |    
T  19324167 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccggtatgattgaagtttaattttatctagta 19324068  T
Q  152 attgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||||||| || || || |||||||| ||||||| |||  | || ||||| | ||||||||||||||||    
T  19324067 attgattgaacgaggcctctttttgatgaaagacccgagcgtttctttctatccaaatcacccacaca 19324000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 32575412 - 32575245
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| ||| ||||  ||| ||| || || |||||||||||||| |||||||| || | ||||||||| |    
T  32575412 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 32575313  T
Q  152 attgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||||||| || || || |||||||| ||||||| |||    || ||||| | ||||||||||||||||    
T  32575312 attgattgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacaca 32575245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 29126016 - 29126183
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| ||| ||||  ||| ||| || || |||||||||||||| |||||||  || | ||||||||| |    
T  29126016 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaaatttaattttatctagta 29126115  T
Q  152 attgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||||||| || || || |||||||| ||||||| |||    || ||||| | ||||||||||||||||    
T  29126116 attgattgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacaca 29126183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 18299607 - 18299773
Alignment:
Q  53 aaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaa 152  Q
    |||||||| | |||||||||||  |||||||||| ||| |||| |||| ||| ||  | |||||||||||||| |||||||| || | ||||||||| ||    
T  18299607 aaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaagctaggacggttccctttcagccaccagtatgattgaagtttaattttatctagtaa 18299706  T
Q  153 ttgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||  || || || |||||||| ||||||| |||  |  | ||||| | ||||||||||||||||    
T  18299707 ttgatggaacgaggcctctttttgatgaaagacccgagcgattctttctatccaaatcacccacaca 18299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 38142182 - 38142015
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| ||| ||||  ||| ||| || || |||||||||||||| |||||||| || | ||||||||  |    
T  38142182 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctaata 38142083  T
Q  152 attgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||||| | || || || |||||||| ||||||| |||    || ||||| | ||||||||||||||||    
T  38142082 attgaatgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacaca 38142015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 15669634 - 15669528
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| ||| ||||  ||| ||| || || |||||||||||||| |||||||| || | ||||||||| |    
T  15669634 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 15669535  T
Q  152 attgatt 158  Q
    |||||||    
T  15669534 attgatt 15669528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 38325872 - 38325836
Alignment:
Q  244 ctgttgcgaataaaaccacttatgagagcctccaccc 280  Q
    |||||||||||||||||||||||||||||||||||||    
T  38325872 ctgttgcgaataaaaccacttatgagagcctccaccc 38325836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 29626856 - 29626689
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| ||| ||||  ||| ||| || || |||||||| |||||  ||||||| || | |||||| || |    
T  29626856 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccatcagtattattgaagtttaattttatcaagta 29626757  T
Q  152 attgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||||| | || || || |||||||| |||||||||||    || ||||| | ||||||||||||||||    
T  29626756 attgaatgaacgaggcctctttttgatgaaagatccgagtgtttctttctatccaaatcacccacaca 29626689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 9948912 - 9948852
Alignment:
Q  19 agaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaat 79  Q
    |||| ||| |||||||||| ||||||||  |||||||||||| | ||||||||||||||||    
T  9948912 agaaggctaccctgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaat 9948852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 13089902 - 13090121
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  13089902 ataagaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccataaatggtaggagaaaacaaaactaggacgatttgccttca 13090001  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13090002 gccaccagtaagattgaagcttgactttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcaccca 13090101  T
Q  216 cacatatgatagccaaataa 235  Q
    |||| |||||||||||||||    
T  13090102 cacacatgatagccaaataa 13090121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 4034416 - 4034635
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4034416 ataagaatgctgccctgttacagaaatattcccaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttca 4034515  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  4034516 gccaccagtaagattgaagcttgactttatccagcaattgattaaaagaagcttctttttggtgaaagatctgatcattcctttcaagccaaatcaccca 4034615  T
Q  216 cacatatgatagccaaataa 235  Q
    |||| |||||||||||||||    
T  4034616 cacacatgatagccaaataa 4034635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 9932233 - 9932424
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  9932233 ccctgttacataataattcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaag 9932332  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| | |||  |||||||||||||||||||||||||||||    
T  9932333 attgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacaca 9932424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 25582718 - 25582909
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  25582718 ccctgttacataataattcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaag 25582817  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| | |||  |||||||||||||||||||||||||||||    
T  25582818 attgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacaca 25582909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 8444388 - 8444594
Alignment:
Q  29 cctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaaga 128  Q
    ||||||||| ||||||||  ||||||||||||   |||||| ||||||||||||| ||||||||||||||||  ||||| || |||||||||||||| ||    
T  8444388 cctgttacataaatattcctaagcaaggtaaagagttcaacaaccatgaatggtaagagaaaacaaaactaggtcgattcgctttcagccaccagtatga 8444487  T
Q  129 ttgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagc 228  Q
    ||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  ||||||||||||| || |||||||||||| | ||||||    
T  8444488 ttggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaaggcagatcacccacacacaagatagc 8444587  T
Q  229 caaataa 235  Q
    |||||||    
T  8444588 caaataa 8444594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 24504037 - 24503820
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| |||||||||| ||||||||  || ||||||||| | |||| ||||||||||||||||||||||||||||||||  || || || |||| |    
T  24504037 aagaaggctaccctgttacataaatattcctaaacaaggtaaagggttcagccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcaac 24503938  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    |||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  |||| |||||||| |||||||||||||    
T  24503937 caccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgaacattactttcaagacaaatcacccaca 24503838  T
Q  218 catatgatagccaaataa 235  Q
    || | |||||||||||||    
T  24503837 cacaagatagccaaataa 24503820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 45540277 - 45540081
Alignment:
Q  39 aaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttg 138  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||   || || || |||||||||||||| |||||||| ||     
T  45540277 aaatattcccaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaaggcggttcgctttcagccaccagtatgattgaagttta 45540178  T
Q  139 actttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagccaaataa 235  Q
    |||||||||| |||||||||||| ||||||||||||||||||||  | ||  |||||||||||||| | |||||||||||| | ||||| |||||||    
T  45540177 actttatctaacaattgattaaaagaagcttctttttggtgaaatgttcgagcattcctttcaagctagatcacccacacacaagatagacaaataa 45540081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 13780981 - 13781171
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| |||| |||||||| |||| |||||||| ||||||||||||||||||||| ||| ||||||||| |||||||| |||||||    
T  13780981 ccctgttacataataattcccaagtaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaattaggacgatttgctttcagcca-cagtaag 13781079  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||| || ||||| | |||  ||||||||| |||||||||| | |||  ||||||||||||||||||||| |||||||    
T  13781080 attgaagcttaactttatttaacaattaagtaatcgaagcttctatttggtgaaaaacccgagcattcctttcaagccaaatcatccacaca 13781171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 10230232 - 10230311
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaac 97  Q
    ||||| |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  10230232 aagaaagctgccctgttacaaaaatattctcaggcaaagtaaatgatttaaccaccatgaatggtaggagaaaacaaaac 10230311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 15729433 - 15729332
Alignment:
Q  33 ttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattga 132  Q
    |||||||||||||||||| |||| |||| || | | ||||||  |||| || |  ||| ||||| ||| ||||||||| ||||||||||| || ||||||    
T  15729433 ttacaaaaatattctcaaacaagataaaagactaagccaccacaaatgataagtaaaatcaaaattaggacgatttgctttcagccaccaatatgattga 15729334  T
Q  133 ag 134  Q
    ||    
T  15729333 ag 15729332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 12912375 - 12912594
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12912375 ataagaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttca 12912474  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  12912475 gccaccagtaagattgaagcttgactttatctagcaattgattaaaagaagcttctttttggtgaaagatccaatcattcctttcaagccatatcaccca 12912574  T
Q  216 cacatatgatagccaaataa 235  Q
    |||| |||||||||||||||    
T  12912575 cacacatgatagccaaataa 12912594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 18972737 - 18972955
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| || |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  18972737 aagaaagctaccgtgttacaaaagtattcccaagcaaggtatatgattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagc 18972836  T
Q  118 caccagtaagattgaagcttgactttatc-tagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccac 216  Q
    ||| |||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||  |  ||||||||||||||||||||||||||    
T  18972837 cacgagtaagattgaagcttaactttatcaaagcaattgattaaacgaagcttctttttggtgaaagattagagcattcctttcaagccaaatcacccac 18972936  T
Q  217 acatatgatagccaaataa 235  Q
    ||| | |||||||||||||    
T  18972937 acacaagatagccaaataa 18972955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 24393874 - 24393670
Alignment:
Q  31 tgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagatt 130  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  24393874 tgttacaaaagtattcccaagcaaggtaaaggattcaaccaccacgaatggtaggagaaaacaaaactaggacgatttactttcagccaccagtaagatt 24393775  T
Q  131 gaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagcca 230  Q
    || |||| |||||||| | |||||||||||| ||||||||||||||||||||||| |   ||||||||||| ||||||||||||||||| | ||||||||    
T  24393774 gaggcttaactttatcaaacaattgattaaacgaagcttctttttggtgaaagattccagcattcctttcatgccaaatcacccacacacaagatagcca 24393675  T
Q  231 aataa 235  Q
    |||||    
T  24393674 aataa 24393670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 6029303 - 6029106
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| ||||||| || ||  |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| || ||||||    
T  6029303 aagaaagctaccctgttgcataataattcccaagcaaggtaaatgatttaaccaccatgtatggtaggagaaaacaaaactaggacgattcgctttcagc 6029204  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    ||| | |||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| | |||  |||||||||||||||||||||||||    
T  6029203 cactaataagattgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcaccca 6029106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 165482 - 165423
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165482 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccat 165423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 224
Target Start/End: Original strand, 30987167 - 30987335
Alignment:
Q  55 ggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaatt 154  Q
    |||||||||| ||| |||||| ||| ||  |||| | |||| |||| ||| ||||| ||||||||||| || |||||||| || | ||||||||| ||||    
T  30987167 ggtaaatgat-caatcaccataaatagttagagagagcaaagctaggacggtttgctttcagccaccaatatgattgaagtttaattttatctagtaatt 30987265  T
Q  155 gattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatga 224  Q
    ||| ||| || | |||||||||| |||| ||| || |||| ||| ||  |||||||||||||||||||||    
T  30987266 gatgaaacgaggtttctttttggagaaaaatctgggcatttcttccagcccaaatcacccacacatatga 30987335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 7093865 - 7093733
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| ||| ||||  ||| ||| || || |||||||||||||| |||||||| || | ||||||||| |    
T  7093865 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 7093766  T
Q  152 attgattaaatgaagcttctttttggtgaaaga 184  Q
    ||||| | || || || |||||||| |||||||    
T  7093765 attgaatgaacgaggcctctttttgatgaaaga 7093733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 8753089 - 8753159
Alignment:
Q  64 ttcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaag 134  Q
    |||||||||||  |||| || ||||||||||| |||| |||||| || |||| ||||||| ||||||||||    
T  8753089 ttcaaccaccaaaaatgataagagaaaacaaagctaggacgattcgctttcaaccaccagaaagattgaag 8753159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 11031761 - 11031544
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  11031761 aagaatgctgccctgttacaaaaatattcccaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaattaggacgatttgccttcagc 11031662  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  11031661 caccagtaagattgaagcttgactttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagtcaaatcacccaca 11031562  T
Q  218 catatgatagccaaataa 235  Q
    || |||||||||||||||    
T  11031561 cacatgatagccaaataa 11031544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 6764393 - 6764186
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    ||||| |||| ||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||  || || || |||||||||||||| |    
T  6764393 ccctgctacataaatattcataagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatg 6764294  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatag 227  Q
    |||||||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  |||| ||||||||||| |||||||||||| | |||||    
T  6764293 attgaagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatag 6764194  T
Q  228 ccaaataa 235  Q
    ||||||||    
T  6764193 ccaaataa 6764186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 12410770 - 12410553
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| || ||||||| ||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||  || || || ||||||    
T  12410770 aagaaggctaccttgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagc 12410671  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    |||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  |||| ||||||||||| ||||||||||    
T  12410670 caccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatcacccaca 12410571  T
Q  218 catatgatagccaaataa 235  Q
    || | |||||||||||||    
T  12410570 cacaagatagccaaataa 12410553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 12422830 - 12422613
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| || ||||||| ||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||  || || || ||||||    
T  12422830 aagaaggctaccttgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagc 12422731  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    |||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  |||| ||||||||||| ||||||||||    
T  12422730 caccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatcacccaca 12422631  T
Q  218 catatgatagccaaataa 235  Q
    || | |||||||||||||    
T  12422630 cacaagatagccaaataa 12422613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 37647948 - 37647731
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| || ||||||| ||||||||  |||||||||||| | | |||||||||||||||||||||||||||||||||||  || || || ||||||    
T  37647948 aagaaggctaccatgttacataaatattcctaagcaaggtaaagggtccaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagc 37647849  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    |||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  |||| ||||||||||| ||||||||||    
T  37647848 caccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatacgagcatttctttcaagccagatcacccaca 37647749  T
Q  218 catatgatagccaaataa 235  Q
    || | |||||||||||||    
T  37647748 cacaggatagccaaataa 37647731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 2380758 - 2380966
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  ||| |||||||||||||| |||| || ||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||     
T  2380758 ccctgttacataataattgtcaagcaaggtaaaggatttaaacaccaagaatggtaggagaaaacgaaactaggacgatttgctttcagccaccagtaaa 2380857  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatag 227  Q
    ||||||| || |||||||||||||||||||||| |||||||||| ||||||||||  || |  ||||||||||||||||||||||||||||| | ||||     
T  2380858 attgaagtttaactttatctagcaattgattaattgaagcttctgtttggtgaaaagtctgagcattcctttcaagccaaatcacccacacacaagataa 2380957  T
Q  228 ccaaataaa 236  Q
    ||| |||||    
T  2380958 ccatataaa 2380966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 3044303 - 3044171
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  3044303 ccctgttacataataattctcaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaag 3044204  T
Q  128 attgaagcttgactttatctagcaattgattaa 160  Q
    |||||||||| ||||||||||||||||||||||    
T  3044203 attgaagcttaactttatctagcaattgattaa 3044171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 7901091 - 7901278
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| |||||||||| ||  |||  |||||||||||||  ||| ||||||||| |||| ||||||||||||||||||| ||||||||| ||||||    
T  7901091 aagaaagctaccctgttacataataatttccaagcaaggtaaagaatttaaccaccataaatgataggagaaaacaaaactaggacgatttgctttcagc 7901190  T
Q  118 caccagtaagattgaagcttg----actttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttca 201  Q
    |||||||||||||||||||||    |||||||||| ||||||||||| |||||||||| |||||||||| | |||  |||||||||||    
T  7901191 caccagtaagattgaagcttgcttaactttatctaacaattgattaattgaagcttctgtttggtgaaaaacccgagcattcctttca 7901278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 34394621 - 34394742
Alignment:
Q  31 tgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagatt 130  Q
    ||||||||||||||| |||||||||||||| |||||||||  || ||||||||||||||||||||||||| |||||||||||||| |||  |||||||||    
T  34394621 tgttacaaaaatattttcaagcaaggtaaaagattcaaccttcacgaatggtaggagaaaacaaaactaggacgatttgccttcaaccaatagtaagatt 34394720  T
Q  131 gaagcttgactttatctagcaa 152  Q
    |||||||  |||||||||||||    
T  34394721 gaagcttatctttatctagcaa 34394742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 27271609 - 27271430
Alignment:
Q  31 tgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagatt 130  Q
    ||||||| || ||||| ||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||| || |  ||||||||||||||  |||    
T  27271609 tgttacataagtattcccaagcaaggtaaagggttcaaccaccatgaaaggtaggagaaaacaaaactaggacggttcgttttcagccaccagtataatt 27271510  T
Q  131 gaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    | |||||         || |||||||||||| |||||||||||||||||||| || ||  |||| |||| |||||||||||||||||||    
T  27271509 ggagctt---------taacaattgattaaaagaagcttctttttggtgaaatattcgagcatttcttttaagccaaatcacccacaca 27271430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 29739963 - 29739885
Alignment:
Q  141 tttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||  |||||||||||  ||||||| | |||||||||| | |||  |||||||||||||||||||||| ||||||    
T  29739963 tttatctgtcaattgattaatcgaagcttttgtttggtgaaaaacccgagcattcctttcaagccaaatcactcacaca 29739885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 29740040 - 29739968
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactag 100  Q
    |||||||||| ||  |||| |||||||  |||| |||| |||||||| ||||| |||||||||||||||||||    
T  29740040 ccctgttacataataattcccaagcaatttaaaagatttaaccaccaagaatgataggagaaaacaaaactag 29739968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 37870773 - 37870992
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  37870773 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaaggattcaaccaccatgaatggtaggagaaaacaaaaccaggacgatttgccttca 37870872  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  37870873 gccactagtaagattgaaacttgactttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcactca 37870972  T
Q  216 cacatatgatagccaaataa 235  Q
    |||| |||||||||||||||    
T  37870973 cacacatgatagccaaataa 37870992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 47590588 - 47590783
Alignment:
Q  24 gctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccag 123  Q
    |||||||||||||| ||| |||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||     
T  47590588 gctgccctgttacataaaaattcccaagcaaggtaaatgatttaaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccaccaa 47590687  T
Q  124 taagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||||||| ||||||||||||||||||||||  ||| ||||| |||||||||| | |||  |||||||||||||||||||||||||||||    
T  47590688 taagattgaagcttaactttatctagcaattgattaatcgaaacttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacaca 47590783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 40850777 - 40850586
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| ||||||||||| ||||||||||||| |||||| || ||||||||||||||||    
T  40850777 ccctgttacataataattcccaagcaaggtaaaggatttaaccaccaagaatggtaggaaaaaacaaaactaggacgattagctttcagccaccagtaag 40850678  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| |||||  ||||| |||||||||||||||||||||||    
T  40850677 attgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaatccgagcattcatttcaagccaaatcacccacaca 40850586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 43499280 - 43499063
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| |||||||||| ||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||  || || || ||||||    
T  43499280 aagaaggctaccctgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagc 43499181  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    |||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  |||| |||||| |||| ||||||||||    
T  43499180 caccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcacgccagatcacccaca 43499081  T
Q  218 catatgatagccaaataa 235  Q
    || | |||||||||||||    
T  43499080 cacaagatagccaaataa 43499063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 9896633 - 9896840
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |  || || || |||||||||||||| |    
T  9896633 ccctgttacataaatattcccaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaacttgggcggttcgctttcagccaccagtatg 9896732  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatag 227  Q
    ||||||| || |||||||||| ||||||||||||  |||||||||||||||| || || ||  |||||||||||||||| |||||||||||| | |||||    
T  9896733 attgaagtttaactttatctaacaattgattaaaataagcttctttttggtggaatattcgagcattcctttcaagccagatcacccacacacaagatag 9896832  T
Q  228 ccaaataa 235  Q
    ||||||||    
T  9896833 ccaaataa 9896840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 48640697 - 48640506
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||| |||  ||||||||||||| |||| |||||||| ||||||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  48640697 ccctgttacataaaaatttccaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactatgacgatttgctttcagccaccagtaag 48640598  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||||||| || ||||||||||||| ||||||||  ||||||||| |||||||||| | |||  ||||| |||||||||||||||||||||||    
T  48640597 attgaagattaactttatctagcagttgattaatcgaagcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacaca 48640506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 56024988 - 56024817
Alignment:
Q  48 caagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatct 147  Q
    ||||||||||||| |||| || || || ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||    
T  56024988 caagcaaggtaaaggatttaaacatcaagaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttaactttatct 56024889  T
Q  148 agcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||||||  ||||||||| |||||||||| | |||  ||||||||||||||||||||| |||||||    
T  56024888 agcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcaaccacaca 56024817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 42718553 - 42718336
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| ||| |||||| ||||||||  |||||||||||| | ||||||||||||||||||||||||||||||||| |||  || || || ||||||    
T  42718553 aagaaggctaccccgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaattaggtcggttcgctttcagc 42718454  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    |||||||| ||||| ||||| |||||||||| ||||||||||||  ||||||||||||||||||| || ||  |||| ||||||||||| ||||||||||    
T  42718453 caccagtatgattggagcttaactttatctaacaattgattaaaataagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccaca 42718354  T
Q  218 catatgatagccaaataa 235  Q
    || | |||||||||||||    
T  42718353 cacaagatagccaaataa 42718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 36651871 - 36652075
Alignment:
Q  31 tgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagatt 130  Q
    ||||||| ||||||||  |||||||||||| | ||||||||||||||||||||||||||||||||||||   || || || ||||||||||| || ||||    
T  36651871 tgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaagtcggttcgctttcagccaccaatatgatt 36651970  T
Q  131 gaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagcca 230  Q
    | ||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  |||| ||||||||||| |||||||||||| | ||||||||    
T  36651971 ggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagcca 36652070  T
Q  231 aataa 235  Q
    |||||    
T  36652071 aataa 36652075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 7743555 - 7743338
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| ||||| |||| ||||||||  || ||||||||| | |||||||||||||||||||||||||||||||||||||  || || || |||| |    
T  7743555 aagaaggctaccctgctacataaatattcctaaacaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcaac 7743456  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    |||||||| ||||||||||| ||||||| || |||||||||||| ||||||||||||||||| || || ||  |||| ||||||||||| ||||||||||    
T  7743455 caccagtatgattgaagcttaactttatttaacaattgattaaaagaagcttctttttggtggaatatgcgagcatttctttcaagccagatcacccaca 7743356  T
Q  218 catatgatagccaaataa 235  Q
    |  | |||||||||||||    
T  7743355 cgcaagatagccaaataa 7743338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 39059850 - 39060055
Alignment:
Q  30 ctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagat 129  Q
    |||||||| |||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |   | || || ||||| |||||||| |||    
T  39059850 ctgttacataaatattcgcaggcaaggtaaatggttcaaccaccatgaatggtaggagaaaacaaaacttgggtggttcgctttcagtcaccagtatgat 39059949  T
Q  130 tgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagcc 229  Q
    |||||||| | |||||||| |||||||||||| ||||||||||||||||| || || ||  ||||||||||||| || |||||||||||| | ||||| |    
T  39059950 tgaagcttaattttatctaacaattgattaaaagaagcttctttttggtggaatattcgagcattcctttcaagtcagatcacccacacacaagatagtc 39060049  T
Q  230 aaataa 235  Q
    ||||||    
T  39060050 aaataa 39060055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 23106851 - 23106938
Alignment:
Q  131 gaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacac 218  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  23106851 gaagcttaattttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacac 23106938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 40345944 - 40346111
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||||| |||||||||||  |||||||||| ||| ||||  ||  ||  || || |||||||||||||| |||||||| || | ||||||||| |    
T  40345944 caaggtaaatggttcaaccaccacaaatggtaggaaaaagcaaaggtatgacagttcgctttcagccaccagtatgattgaagtttaattttatctagta 40346043  T
Q  152 attgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||||| | || || || |||||||| ||||||| |||    || ||||| | ||||||||||||||||    
T  40346044 attgaatgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacaca 40346111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 50771745 - 50771581
Alignment:
Q  55 ggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaatt 154  Q
    |||||| | ||||||||| |  ||| ||| || ||||||||  ||||||| || || |||||||||||||| ||||||||  | | ||||||||| ||||    
T  50771745 ggtaaagggttcaaccactacaaattgtacgaaaaaacaaaggtagaacggttcgctttcagccaccagtatgattgaagtataattttatctagtaatt 50771646  T
Q  155 gattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||| || ||  | |||||||| |||||||  ||    || ||||| ||||||||||||||||||    
T  50771645 gattgaacgagacctctttttgatgaaagactcgagtgtttctttctagccaaatcacccacaca 50771581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 34549336 - 34549117
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34549336 ataagaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttca 34549237  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||||||||||||||| ||||||||    
T  34549236 gccaccagtaagattgaagcttgactttatctagcaattgattaaaagaagcttctttttggttaaagatcctatcattcctttcaagccatatcaccca 34549137  T
Q  216 cacatatgatagccaaataa 235  Q
    |||| |||||||||||||||    
T  34549136 cacacatgatagccaaataa 34549117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 19228014 - 19228232
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttca 115  Q
    ||||||||| ||||||||||||||||||||  |||  |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  19228014 ataagaatgttgccctgttacaaaaatatttccaaataaggtaaaggattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttaccttca 19228113  T
Q  116 gccaccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcaccca 215  Q
    ||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  19228114 gccaccgataagattgaagcttgactttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcaccca 19228213  T
Q  216 cacatatgatagccaaata 234  Q
    |||| ||||||||||||||    
T  19228214 cacacatgatagccaaata 19228232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 20505608 - 20505417
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  20505608 ccctgttacataacaattcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaag 20505509  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| | |||  |||||||||||||||||||||||||||||    
T  20505508 attgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacaca 20505417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 26676862 - 26676671
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  26676862 ccctgttacataataattcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaag 26676763  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| | |||  |||||||||||||||||||||||||||||    
T  26676762 attgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacaca 26676671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 31911675 - 31911892
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| |||| ||||| | | |||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||  ||||||  | ||||||    
T  31911675 aagaaagctaccctattacatataaattcccaagcaaggtaaatgactcaaccaccacgaatggtaggagaaaacaaaactatgacgattcactttcagc 31911774  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
    ||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |  ||||||||||||| ||||||||||| |    
T  31911775 cactagtaagattgaagcttaactttatctagcaattgattaaacgaaacttctttttggtgaaagatctgagcattcctttcaagtcaaatcacccata 31911874  T
Q  218 catatgatagccaaataa 235  Q
    || | |||||||||||||    
T  31911875 cacaagatagccaaataa 31911892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 33936410 - 33936193
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| |||| |||||| ||||||| ||| ||||||||| ||||| ||||||| |||||||| |||||||||||||||  |||||| || |||||     
T  33936410 aagaaagctaccctattacaacaatattcccaatcaaggtaaaggattcgaccaccacgaatggtaagagaaaacaaaactatgacgattcgctttcagt 33936311  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
     | ||||||||||||||||| ||||||| ||||||||||||||| ||| |||| |||||||||||||||||  |||||||||||||||||||||||||||    
T  33936310 tatcagtaagattgaagcttaactttatttagcaattgattaaacgaatcttcattttggtgaaagatccgagcattcctttcaagccaaatcacccaca 33936211  T
Q  218 catatgatagccaaataa 235  Q
    || | |||||| ||||||    
T  33936210 cacaagatagctaaataa 33936193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 33676633 - 33676824
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||| |||| ||| ||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  33676633 ccctgttacataaaaattcccaaacaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaag 33676732  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||| |||||||||| | | |  |||||||||||||||||||||| ||||||    
T  33676733 attgaagcttaactttatctagcaattgattaatcgaaacttctgtttggtgaaaaacctgagcattcctttcaagccaaatcactcacaca 33676824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 28756617 - 28756803
Alignment:
Q  30 ctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagat 129  Q
    |||||||| ||  |||| ||| ||||||||| |||| |||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||    
T  28756617 ctgttacataataattcccaaacaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggatgatttgctttcagccaccagtaagat 28756716  T
Q  130 tgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccac 216  Q
    |||||||| |||||||||| |||||||||||  ||||||||| |||||||||| | |||  ||||||||||||||||||||||||||    
T  28756717 tgaagcttaactttatctaacaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccac 28756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 46732030 - 46731841
Alignment:
Q  30 ctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagat 129  Q
    |||||||| ||  |||||||||||||||||| |||| ||||||||  |||||||||||||||||||| ||| ||||||||| ||||| |||||| |||||    
T  46732030 ctgttacataataattctcaagcaaggtaaaggatttaaccaccaaaaatggtaggagaaaacaaaattaggacgatttgctttcagtcaccagcaagat 46731931  T
Q  130 tgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||| ||||||||||||||||||||||  ||||||| | |||||||||| | ||| | ||||||||||||||||||||||||||||    
T  46731930 tgaagcttaactttatctagcaattgattaatcgaagcttttgtttggtgaaaaacccgattattcctttcaagccaaatcacccacaca 46731841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 4532217 - 4532421
Alignment:
Q  31 tgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagatt 130  Q
    ||||||| ||||||||  ||||||||| || | |||||||||||||||||||||||||||||||||||||  || || || |||||||||||||| ||||    
T  4532217 tgttacataaatattcctaagcaaggtgaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgatt 4532316  T
Q  131 gaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagcca 230  Q
    |  |||| |||||||||| |||||||||||| |||| ||||||||||||||| || ||  ||||||||||||| || |||||||||||| | ||||| ||    
T  4532317 ggtgcttaactttatctaacaattgattaaaagaagtttctttttggtgaaatatgcgagcattcctttcaagtcagatcacccacacacaagatagtca 4532416  T
Q  231 aataa 235  Q
    |||||    
T  4532417 aataa 4532421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 27007514 - 27007715
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| |||||||||||| | |||  |||| || ||||| ||||||||||||| |||||||||||||||||||||||||||  ||| || ||||||    
T  27007514 aagaaagctaccctgttacaaataaatttccaagtaatgtaaaggattcaaccaccacgaatggtaggagaaaacaaaactagaaaaattcgctttcagc 27007613  T
Q  118 caccagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccaca 217  Q
     |||| || |||||||  || ||| ||||||||||||||||||| |||| ||||||||||||||||| |||  ||||| |||||||||||||||||||||    
T  27007614 taccaatatgattgaaatttaactctatctagcaattgattaaacgaagattctttttggtgaaagacccgaacattcatttcaagccaaatcacccaca 27007713  T
Q  218 ca 219  Q
    ||    
T  27007714 ca 27007715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 51534596 - 51534752
Alignment:
Q  19 agaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagcc 118  Q
    |||||||| |||| ||||| ||||||||  |||||||||||| | ||||| ||||||||||||||||||||| |||||||||  || || || |||||||    
T  51534596 agaatgctaccctattacataaatattcctaagcaaggtaaagggttcaatcaccatgaatggtaggagaaaccaaaactaggtcggttcgctttcagcc 51534695  T
Q  119 accagtaagattgaagcttgactttatctagcaattgattaaatgaagcttcttttt 175  Q
    |||| || ||||| ||||| |||||||||| |||||||||||| |||| ||||||||    
T  51534696 accaatatgattggagcttaactttatctaacaattgattaaaagaagtttcttttt 51534752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 52022732 - 52022615
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| | | || |||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| || ||| || ||| |||  |||||||    
T  52022732 ccctgttacatataaatcctcaagtaaggtaaaggattcaaccaccatgaatgataggagaaaacaaaactaggacaattcgctttcggccgtcagtaag 52022633  T
Q  128 attgaagcttgactttat 145  Q
    |||||||||| |||||||    
T  52022632 attgaagcttaactttat 52022615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 15759900 - 15759768
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||| ||  |||||||||| ||| ||||  ||| ||| || || |||||||||||||| |||||||| || | ||||||||| |    
T  15759900 caaggtaaagggttcaaccatcacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 15759801  T
Q  152 attgattaaatgaagcttctttttggtgaaaga 184  Q
    ||||||| || ||  | |||||||| |||||||    
T  15759800 attgattgaacgagacctctttttgatgaaaga 15759768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 36016748 - 36016712
Alignment:
Q  103 cgatttgccttcagccaccagtaagattgaagcttga 139  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  36016748 cgatttgctttcagccaccattaagattgaagcttga 36016712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 23771 - 23553
Alignment:
Q  18 aagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagc 117  Q
    ||||| ||| || |||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||    
T  23771 aagaaagctaccgtgttacaaaagtatttccaagcaaggtaaatgattcaaccaccacgaatggtaggagaaaacaaaactatgacgatttgctttcagc 23672  T
Q  118 caccagtaagattgaagcttgactttatc-tagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccac 216  Q
    ||| ||||||| |||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||  |  ||||||||||||||||||||||||||    
T  23671 cacgagtaagaatgaagcttaactttatcaaagcaattgattaaacgaagcttctttttggtgaaagatttgagcattcctttcaagccaaatcacccac 23572  T
Q  217 acatatgatagccaaataa 235  Q
    ||| | |||||||||||||    
T  23571 acacaagatagccaaataa 23553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 9550 - 9343
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||  || || || |||||||||||||| |    
T  9550 ccctgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatg 9451  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatag 227  Q
    |||||||||| |||||||||| ||||||||||||  ||||||||||||||||||| || ||  |||||||||||||||| |||||||||||| | |||||    
T  9450 attgaagcttaactttatctaacaattgattaaaataagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatag 9351  T
Q  228 ccaaataa 235  Q
    ||||||||    
T  9350 ccaaataa 9343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 10436568 - 10436759
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  10436568 ccctgttacataataattcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaag 10436667  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| | |||  |||||||||||||||||||||||||||||    
T  10436668 attgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacaca 10436759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 20406342 - 20406151
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  20406342 ccctgttacataataattcccaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaag 20406243  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||| ||||  ||||||||| |||||||||| |||||  ||||||||||||| |||||||||||||||    
T  20406242 attgaagcttaactttatctagcaattgcttaatcgaagcttctgtttggtgaaaaatccgagcattcctttcaagtcaaatcacccacaca 20406151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 15030024 - 15029846
Alignment:
Q  48 caagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatct 147  Q
    ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||  | |||| || |||| |||||| |||||||||||||| |||||||||    
T  15030024 caagcaaggtaaaagatttaaccaccatgtatggtaggagaaaccaaaactatgatgattcgctttcaaccaccaataagattgaagcttaactttatct 15029925  T
Q  148 agcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgata 226  Q
    |||||||||||||  ||||||| | |||||||||| | ||   ||||| |||||||||||||||||||| |||| ||||    
T  15029924 agcaattgattaatcgaagcttttgtttggtgaaaaacccaagcattcatttcaagccaaatcacccacgcataagata 15029846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 53459080 - 53459235
Alignment:
Q  64 ttcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaatg 163  Q
    |||||||||||  |||||||||| |||  |||  ||||||| || || |||||||||||||| |||||||| || | ||||||||| |||||||| || |    
T  53459080 ttcaaccaccaccaatggtaggaaaaagtaaaggtagaacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacg 53459179  T
Q  164 aagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    | || |||||||| ||||||| |||    || ||||| | ||||||||||||||||    
T  53459180 aggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacaca 53459235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 28432829 - 28432665
Alignment:
Q  55 ggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaatt 154  Q
    |||||||||||||||||| |  ||||||| |||||| |||| |||| ||| ||  | |||||||||||||| |||| |||||| | ||| || || ||||    
T  28432829 ggtaaatgattcaaccacgacaaatggtaagagaaagcaaagctaggacggttctctttcagccaccagtatgattaaagcttaattttgtcgagtaatt 28432730  T
Q  155 gattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||| |   || |  |||| ||| ||||||| |||  |||| ||||||| ||||||||| ||||||    
T  28432729 gatgaggcgaggtctcttattgatgaaagacccgagcatttctttcaatccaaatcactcacaca 28432665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 22639541 - 22639325
Alignment:
Q  19 agaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagcc 118  Q
    |||| ||| |||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||  | |||||||    
T  22639541 agaaggctaccctgttacataaatattcctaagcaaggtaaatggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcactttcagcc 22639442  T
Q  119 accagtaagattgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacac 218  Q
    |||| || ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||| || ||  |||||||||||||||| |||||||||||    
T  22639441 accaatatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacac 22639342  T
Q  219 atatgatagccaaataa 235  Q
    | | |||||||||||||    
T  22639341 acaagatagccaaataa 22639325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 26369072 - 26369263
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaag 127  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| |||| |||||||||||||||||||| |||||| || ||||||||||||||||    
T  26369072 ccctgttacataataattcccaagcaaggtaaaagatttaaccaccaagaatagtaggagaaaacaaaactaggacgattagctttcagccaccagtaag 26369171  T
Q  128 attgaagcttgactttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||| | |||  |||||||||||||||||||||||||||||    
T  26369172 attgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacaca 26369263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 19021351 - 19021156
Alignment:
Q  40 aatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttga 139  Q
    |||||||  |||||||||||| | |||||||||||||||||| ||||||||||||||||||  || || || |||||||||||||| ||||| ||||| |    
T  19021351 aatattcctaagcaaggtaaagggttcaaccaccatgaatggcaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaa 19021252  T
Q  140 ctttatctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagccaaataa 235  Q
    ||||||||| |||||||||||| |||||||||||||||||||| || ||  |||| ||||||||||| |||||||||||| | |||||||||||||    
T  19021251 ctttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataa 19021156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 22580548 - 22580738
Alignment:
Q  48 caagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagcca---ccagtaagattgaagcttgacttta 144  Q
    ||||||||||||||||||||||||||| ||||||||||| |||  |||||||| || ||| || ||||||||   |||||||||||||||||| ||||||    
T  22580548 caagcaaggtaaatgattcaaccaccacgaatggtaggaaaaagtaaaactaggactattcgctttcagccagcaccagtaagattgaagcttcacttta 22580647  T
Q  145 tctagcaattgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacacatatgatagccaaataa 235  Q
    ||||||||||||||||| |||| || | |||| ||||||| |||  |||||||||||||||||||||||| |||| | |||||||| ||||    
T  22580648 tctagcaattgattaaacgaagtttatatttgttgaaagacccgaacattcctttcaagccaaatcacccgcacacaagatagccatataa 22580738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 6537039 - 6536979
Alignment:
Q  39 aaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaacta 99  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  6537039 aaatattatcaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaacta 6536979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 25982339 - 25982506
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| |||||||| || | ||| || || |||||||||||||| |||||||| || | ||||||||| |    
T  25982339 caaggtaaagggttcaaccaccacaaatggtaggaaaaaacaaagcttggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 25982438  T
Q  152 attgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    ||||||  || ||  | |||||||| |||||||  ||| | || ||||| | ||||||||||||||||    
T  25982439 attgatggaacgagacctctttttgatgaaagacacgggcgtttctttctatccaaatcacccacaca 25982506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 40973444 - 40973599
Alignment:
Q  64 ttcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaatg 163  Q
    |||||||||||  |||||||||| |||  |||||||| ||| || || |||||||||||||| |||||||| || | ||||||||| |||||||  || |    
T  40973444 ttcaaccaccacaaatggtaggaaaaagtaaaactaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacg 40973543  T
Q  164 aagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    | || |||||||| ||||||| |||  | || ||||| | |||||| |||||||||    
T  40973544 aggcctctttttgatgaaagacccgagcgtttctttctatccaaataacccacaca 40973599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 950 - 861
Alignment:
Q  16 ataagaatgctgccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacga 105  Q
    ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  950 ataagaatgctgccctgttacaaaaatattcccaagcaaggttaaggattcaaccaccatgaatggtaggagaaaacaaaactaggacga 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 9043 - 8876
Alignment:
Q  52 caaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactagaacgatttgccttcagccaccagtaagattgaagcttgactttatctagca 151  Q
    ||||||||| | |||||||||||  |||||||||| ||| |||| |||| ||| || || |||||||||||||| |||||||| || | ||||||||| |    
T  9043 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaagctaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 8944  T
Q  152 attgattaaatgaagcttctttttggtgaaagatccggtcattcctttcaagccaaatcacccacaca 219  Q
    |||||| ||| || || |||||| | ||||||| |||  | || ||||| | ||||||||||||||||    
T  8943 attgatgaaacgaggcctcttttagatgaaagacccgagcgtttctttctatccaaatcacccacaca 8876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 124327 - 124397
Alignment:
Q  28 ccctgttacaaaaatattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaact 98  Q
    |||||||||| ||  |||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  124327 ccctgttacataataattcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaact 124397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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