View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0872_low_3 (Length: 482)
Name: NF0872_low_3
Description: NF0872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0872_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 98 - 476
Target Start/End: Complemental strand, 18079098 - 18078720
Alignment:
| Q |
98 |
ttcatcagaatccttagctaccatgtcatcagtttcaacagaaccttcatcgtccgttgacaacaacaacaccattttggcgccaaagtccatagcttgt |
197 |
Q |
| |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18079098 |
ttcatcagaatccttagctgccatgtcatcagcttcaacagaaccttcatcgtccgtcgacaacagcaacaccattttggcgccaaagtccatagcttgt |
18078999 |
T |
|
| Q |
198 |
ttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagctggtg |
297 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18078998 |
ttttctcgatcaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagctggtg |
18078899 |
T |
|
| Q |
298 |
ccacgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttact |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
18078898 |
ccacgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgactttgatttttact |
18078799 |
T |
|
| Q |
398 |
gtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtaggtgaaccctaactgtctgtgctgc |
476 |
Q |
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||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
18078798 |
gtatatgtgactatgacgctgttctcgtcctccgccattgaaatttcaaatgtaggtgaaccgtaattgtctatgctgc |
18078720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 18077193 - 18077026
Alignment:
| Q |
98 |
ttcatcagaatccttagctaccatgtcatcagtttcaacagaaccttcatcgtccgttgacaacaacaacaccattttggcgccaaagtccatagcttgt |
197 |
Q |
| |
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||||||||||||||||||| |||||||||||| |||||| |||||||||||||| | ||||||| || ||| | |||||||||| ||||||| |||| |
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| T |
18077193 |
ttcatcagaatccttagcttccatgtcatcagcttcaacggaaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgt |
18077094 |
T |
|
| Q |
198 |
ttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacga |
265 |
Q |
| |
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||||||||||||||| || |||| || ||||||| ||||| || ||||||||| ||||||||||||| |
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|
| T |
18077093 |
ttttctcgaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaacga |
18077026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 465
Target Start/End: Complemental strand, 18076913 - 18076816
Alignment:
| Q |
368 |
gggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtaggtgaaccctaact |
465 |
Q |
| |
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||||| |||||||||||||||||||| ||| |||||||| ||||| || ||||||||| ||||||| ||||||| ||||| |||| |||||||||| |
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| T |
18076913 |
gggaccgtgagtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccatagaaatttgaaatgcaggttaaccctaact |
18076816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 98 - 323
Target Start/End: Complemental strand, 51478704 - 51478479
Alignment:
| Q |
98 |
ttcatcagaatccttagctaccatgtcatcagtttcaacagaaccttcatcgtccgttgacaacaacaacaccattttggcgccaaagtccatagcttgt |
197 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||| |||||||||| |||| |||||| |||| ||||| ||||| |
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| T |
51478704 |
ttcatcagaatccttagctgccatgctatcagcttcaacagaaccatcatcgtccgtcgacaacaacaccaccgttttgggtccaacatccatgtcttgt |
51478605 |
T |
|
| Q |
198 |
ttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagctggtg |
297 |
Q |
| |
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||| ||||| ||||| || |||||||| || || | ||||||| |||| |||| |||| |||||||| ||| ||| ||| ||||||||||||||| ||| |
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| T |
51478604 |
tttcctcgatcaggaacagattcttcagctacttccaccacgtcatcacgttcatcgtccttcaacgacgccgtttcagctccaacaccgatagcttgtg |
51478505 |
T |
|
| Q |
298 |
ccacgtcatcaccctccaacggtacc |
323 |
Q |
| |
|
|||| ||| || |||||||||||||| |
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|
| T |
51478504 |
ccacatcaccatcctccaacggtacc |
51478479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 51474504 - 51474337
Alignment:
| Q |
98 |
ttcatcagaatccttagctaccatgtcatcagtttcaacagaaccttcatcgtccgttgacaacaacaacaccattttggcgccaaagtccatagcttgt |
197 |
Q |
| |
|
||||||||||| ||||| | |||||||||||| |||||| |||||||||||||||| ||||||||||| ||| ||||||||||| ||||||| |||| |
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| T |
51474504 |
ttcatcagaattcttagttgccatgtcatcagcttcaacggaaccttcatcgtccgatgacaacaacaccactgctttggcgccaacatccatagtttgt |
51474405 |
T |
|
| Q |
198 |
ttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacga |
265 |
Q |
| |
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||||||||| ||||| || |||||||| ||||||||||||| || ||||||||| |||| |||||||| |
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| T |
51474404 |
ttttctcgatcaggaacatattcttcagctgctgctgccacatcatcaccttcaccgtcattcaacga |
51474337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 331 - 465
Target Start/End: Complemental strand, 51478443 - 51478309
Alignment:
| Q |
331 |
tcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctcc |
430 |
Q |
| |
|
|||||||||||||||||||||| |||| | | |||||||||| |||||| ||||||||||||| ||| |||| ||| ||||| | |||||||||||||| |
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| T |
51478443 |
tcgatgatcatgatcaggaatgggttcatctgggtccgggacggtgagtatgactttgattttcactatatacgtgactatgtcattgttctcttcctca |
51478344 |
T |
|
| Q |
431 |
gccattgaaatttcaaatgtaggtgaaccctaact |
465 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |
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| T |
51478343 |
gccattgaaatttcaaatgcaggtgagccctaact |
51478309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 105 - 325
Target Start/End: Complemental strand, 51454515 - 51454295
Alignment:
| Q |
105 |
gaatccttagctaccatgtcatcagtttcaacagaaccttcatcgtccgttgacaacaacaacaccattttggcgccaaagtccatagcttgtttttctc |
204 |
Q |
| |
|
|||||| ||||| | ||||||||| |||||| ||||||||||||||| | ||| | ||| |||| |||||||||||| | ||| ||||||||||||| |
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| T |
51454515 |
gaatccctagctgcaatgtcatcaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc |
51454416 |
T |
|
| Q |
205 |
gaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagctggtgccacgtc |
304 |
Q |
| |
|
|| ||||| | |||||||| ||||| | ||||||| |||| |||| | || |||||||| ||| ||| ||| |||||||||| |||| |||||||||| |
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|
| T |
51454415 |
gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtc |
51454316 |
T |
|
| Q |
305 |
atcaccctccaacggtaccgt |
325 |
Q |
| |
|
| || |||||||||||||||| |
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|
| T |
51454315 |
accatcctccaacggtaccgt |
51454295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 51454259 - 51454143
Alignment:
| Q |
333 |
gatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgc |
432 |
Q |
| |
|
|||||||||||||||||||| |||| | | || |||| |||||||||||||||||||| ||| |||| ||| || || |||||||||||||||||| |
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|
| T |
51454259 |
gatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactgtgtggttgttctcttcctccgc |
51454160 |
T |
|
| Q |
433 |
cattgaaatttcaaatg |
449 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
51454159 |
cattgaaatttcgaatg |
51454143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 453
Target Start/End: Original strand, 42431626 - 42431704
Alignment:
| Q |
375 |
tgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtagg |
453 |
Q |
| |
|
||||||||||||||||||| || |||||||| | ||| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
42431626 |
tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattgaaatttctaatgtagg |
42431704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 449
Target Start/End: Complemental strand, 42433456 - 42433368
Alignment:
| Q |
361 |
taggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatg |
449 |
Q |
| |
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|||||| ||||| |||| ||||||||||||| || ||||||| | ||| |||||||||||||||||||||||||||||||||||| |
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| T |
42433456 |
taggtctgggacaatgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattgaaatttcaaatg |
42433368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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