View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0873_high_11 (Length: 202)
Name: NF0873_high_11
Description: NF0873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0873_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 15815181 - 15815328
Alignment:
| Q |
37 |
cagagatacaacaagaggaggaagaagggtttggctttatgtgcttcttgaagattatggctgaagactctactggatcagatgtatttgtttagcccga |
136 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15815181 |
cagagatacagcaagaggaggaagaagggtttggctttatg--cttcttgaagattatggctgaagactctactggatcagatgtatttgtttagcccga |
15815278 |
T |
|
| Q |
137 |
tgaattatcaagcccatgcattttctggctatataaaggaagatccaaac |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
15815279 |
tgaattatcaagcccatgcattttctggctctataaaggaagacccaaac |
15815328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 30710585 - 30710550
Alignment:
| Q |
37 |
cagagatacaacaagaggaggaagaagggtttggct |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30710585 |
cagagatacaacaagaggaggaagaagggtttggct |
30710550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 30718858 - 30718823
Alignment:
| Q |
38 |
agagatacaacaagaggaggaagaagggtttggctt |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30718858 |
agagatacaacaagaggaggaagaagggtttggctt |
30718823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 30689816 - 30689780
Alignment:
| Q |
37 |
cagagatacaacaagaggaggaagaagggtttggctt |
73 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30689816 |
cagagacacaacaagaggaggaagaagggtttggctt |
30689780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 30698702 - 30698667
Alignment:
| Q |
37 |
cagagatacaacaagaggaggaagaagggtttggct |
72 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30698702 |
cagagatacaacaagaggaggaagaagagtttggct |
30698667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 27931740 - 27931840
Alignment:
| Q |
78 |
tgcttcttgaagattatggctgaagactctactggatcagatgtatttgtttagcccga-tgaattatcaagcccatgcattttctggctatataaagga |
176 |
Q |
| |
|
||||||| ||||||| | | ||||||||||| |||||||| |||||| ||||||||||| |||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
27931740 |
tgcttctagaagattgtagttgaagactctattggatcagctgtatt-gtttagcccgagtgaagaa-caagcccatgcattctctggctatataaagga |
27931837 |
T |
|
| Q |
177 |
aga |
179 |
Q |
| |
|
||| |
|
|
| T |
27931838 |
aga |
27931840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 22884799 - 22884881
Alignment:
| Q |
96 |
gctgaagactctactggatcagatgtatttgtttagcccgatgaattatcaagcccatgcattttctggctatataaaggaaga |
179 |
Q |
| |
|
||||||||| ||| ||||||| |||||| ||||||||||| || |||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
22884799 |
gctgaagacactattggatcaactgtatt-gtttagcccgacagatgatcaagcccatgcactctctgtctatataaaggaaga |
22884881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 10290955 - 10290919
Alignment:
| Q |
143 |
atcaagcccatgcattttctggctatataaaggaaga |
179 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
10290955 |
atcaagcccatgcattctctgactatataaaggaaga |
10290919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 2154357 - 2154393
Alignment:
| Q |
143 |
atcaagcccatgcattttctggctatataaaggaaga |
179 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2154357 |
atcaagcccatgcattctctagctatataaaggaaga |
2154393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2729 times since January 2019
Visitors: 6167