View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0873_high_3 (Length: 328)
Name: NF0873_high_3
Description: NF0873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0873_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 14134073 - 14133770
Alignment:
| Q |
13 |
aatattataatcaacttgcttatttatcacgtagttatgacctcatcttattttttaaattcagnnnnnnnn-actataaattcttaaatttagttaagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14134073 |
aatattataatcaacttgcttatttatcacgtagttatgacctcatcttattttttaaattcagtttttttttactataaattcttaaatttagttaagc |
14133974 |
T |
|
| Q |
112 |
ttcatgaaaatttgacacgt-----gttgggccaataaggaaaatagttcggagcagtccaagatgaagattgctctttagacttcaaaaattgttatca |
206 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
14133973 |
ttcatgaaaattttacacgtactgcgttgggccaataaggaaaatagttcggagcagtccaagatgaagattgctctttagacttcaaagattgctatca |
14133874 |
T |
|
| Q |
207 |
cacagctaaaaataacttttaatacctcaaacgacagttaactgtcgttcattgtttaatttttcttttggaatgaacggttgttaaccgttgttgaagt |
306 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
14133873 |
cacagctgaaaatgacttttaatacctctaacggcacttaactgtcgttcgttgtttaatttttcttttggaatgaacggttgttaactgctgttggagt |
14133774 |
T |
|
| Q |
307 |
tatt |
310 |
Q |
| |
|
|||| |
|
|
| T |
14133773 |
tatt |
14133770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 50765578 - 50765684
Alignment:
| Q |
172 |
gaagattgctctttagacttcaaaaattgttatcacacagctaaaaataacttttaatacctcaaacgacagttaactgtcgttcattgtttaatttttc |
271 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| | ||||| | |||||||||||| ||| ||||||||| || ||| ||||||||||||| |
|
|
| T |
50765578 |
gaagattgctctttagacttcaaagattgctatcacacacttgaaaatgatttttaatacctccaacagcagttaactatcattcgctgtttaatttttc |
50765677 |
T |
|
| Q |
272 |
ttttgga |
278 |
Q |
| |
|
||||||| |
|
|
| T |
50765678 |
ttttgga |
50765684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 283
Target Start/End: Complemental strand, 50549091 - 50548980
Alignment:
| Q |
172 |
gaagattgctctttagacttcaaaaattgttatcacacagctaaaaataacttttaatacctcaaacgacagttaactgtcgttcattgtttaatttttc |
271 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||| | || |||| || || |||| ||| ||||| ||| || |||||| | |||||||||||||| |
|
|
| T |
50549091 |
gaagattgctttttagacttcaaagattgctatcacagacctgcaaatgaccttcaatatctccaacgatagtcaattgtcgtccgttgtttaatttttc |
50548992 |
T |
|
| Q |
272 |
ttttggaatgaa |
283 |
Q |
| |
|
||| ||||||| |
|
|
| T |
50548991 |
tttcagaatgaa |
50548980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 48849187 - 48849129
Alignment:
| Q |
172 |
gaagattgctctttagacttcaaaaattgttatcacacagctaaaaataacttttaata |
230 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| || |||| ||||||||||| ||||||| |
|
|
| T |
48849187 |
gaagattgctctttagacgtcaaagattgttctctcacacctaaaaataacatttaata |
48849129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 45663316 - 45663277
Alignment:
| Q |
171 |
tgaagattgctctttagacttcaaaaattgttatcacaca |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
45663316 |
tgaagattgctctttagacttcaaagattgctatcacaca |
45663277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 833 times since January 2019
Visitors: 6131