View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0873_high_9 (Length: 209)
Name: NF0873_high_9
Description: NF0873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0873_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 15815328 - 15815181
Alignment:
| Q |
42 |
gtttggatcttcctttatatagccagaaaatgcatgggcttgataattcatcgggctaaacaaatacatctgatccagtagagtcttcagccataatctt |
141 |
Q |
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| T |
15815328 |
gtttgggtcttcctttatagagccagaaaatgcatgggcttgataattcatcgggctaaacaaatacatctgatccagtagagtcttcagccataatctt |
15815229 |
T |
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| Q |
142 |
caagaagcacataaagccaaacccttcttcctcctcttgttgtatctctg |
191 |
Q |
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| T |
15815228 |
caagaag--cataaagccaaacccttcttcctcctcttgctgtatctctg |
15815181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 30710550 - 30710585
Alignment:
| Q |
156 |
agccaaacccttcttcctcctcttgttgtatctctg |
191 |
Q |
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| T |
30710550 |
agccaaacccttcttcctcctcttgttgtatctctg |
30710585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 30718823 - 30718858
Alignment:
| Q |
155 |
aagccaaacccttcttcctcctcttgttgtatctct |
190 |
Q |
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| T |
30718823 |
aagccaaacccttcttcctcctcttgttgtatctct |
30718858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 30689780 - 30689816
Alignment:
| Q |
155 |
aagccaaacccttcttcctcctcttgttgtatctctg |
191 |
Q |
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| T |
30689780 |
aagccaaacccttcttcctcctcttgttgtgtctctg |
30689816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 30698667 - 30698702
Alignment:
| Q |
156 |
agccaaacccttcttcctcctcttgttgtatctctg |
191 |
Q |
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| T |
30698667 |
agccaaactcttcttcctcctcttgttgtatctctg |
30698702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 27931840 - 27931740
Alignment:
| Q |
49 |
tcttcctttatatagccagaaaatgcatgggcttgataattca-tcgggctaaacaaatacatctgatccagtagagtcttcagccataatcttcaagaa |
147 |
Q |
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|||||||||||||||||||| |||||||||||||| | |||| ||||||||||| |||||| |||||||| ||||||||||| | | ||||||| |||| |
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| T |
27931840 |
tcttcctttatatagccagagaatgcatgggcttg-ttcttcactcgggctaaac-aatacagctgatccaatagagtcttcaactacaatcttctagaa |
27931743 |
T |
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| Q |
148 |
gca |
150 |
Q |
| |
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||| |
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| T |
27931742 |
gca |
27931740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 22884881 - 22884799
Alignment:
| Q |
49 |
tcttcctttatatagccagaaaatgcatgggcttgataattcatcgggctaaacaaatacatctgatccagtagagtcttcagc |
132 |
Q |
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| T |
22884881 |
tcttcctttatatagacagagagtgcatgggcttgatcatctgtcgggctaaac-aatacagttgatccaatagtgtcttcagc |
22884799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 10290919 - 10290955
Alignment:
| Q |
49 |
tcttcctttatatagccagaaaatgcatgggcttgat |
85 |
Q |
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| T |
10290919 |
tcttcctttatatagtcagagaatgcatgggcttgat |
10290955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 2154393 - 2154357
Alignment:
| Q |
49 |
tcttcctttatatagccagaaaatgcatgggcttgat |
85 |
Q |
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|||||||||||||||| ||| |||||||||||||||| |
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| T |
2154393 |
tcttcctttatatagctagagaatgcatgggcttgat |
2154357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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