View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0873_low_11 (Length: 247)
Name: NF0873_low_11
Description: NF0873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0873_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2329756 - 2329988
Alignment:
| Q |
1 |
caccaccaagaagaccacctcaacccgcccccgtggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaa |
100 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2329756 |
caccaccaagaaaaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaa |
2329855 |
T |
|
| Q |
101 |
ccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2329856 |
ccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccacc |
2329955 |
T |
|
| Q |
201 |
acgctctcgttcaaaactcctccgtcttctctg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2329956 |
acgctctcgttcaaaactcctccgtcttctctg |
2329988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 2326078 - 2326256
Alignment:
| Q |
38 |
ccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtccta |
137 |
Q |
| |
|
|||||||| || || |||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2326078 |
ccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta |
2326177 |
T |
|
| Q |
138 |
tcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
216 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2326178 |
tcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaa |
2326256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 2292919 - 2293099
Alignment:
| Q |
53 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
152 |
Q |
| |
|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | | ||| |
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|
| T |
2292919 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata |
2293018 |
T |
|
| Q |
153 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||||||||||||| | ||||||||||||||| ||| ||||||||| |
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|
| T |
2293019 |
tcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctg |
2293099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 2320239 - 2320405
Alignment:
| Q |
53 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
152 |
Q |
| |
|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | | ||| |
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|
| T |
2320239 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata |
2320338 |
T |
|
| Q |
153 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| ||||| | ||||||||||||||| |
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|
| T |
2320339 |
tcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc |
2320405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 2309250 - 2309416
Alignment:
| Q |
53 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
152 |
Q |
| |
|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | | ||| |
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|
| T |
2309250 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccata |
2309349 |
T |
|
| Q |
153 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
219 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||| ||||| | ||||||||||||||| |
|
|
| T |
2309350 |
tcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc |
2309416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2350056 - 2350288
Alignment:
| Q |
1 |
caccaccaagaagaccacctcaacccgcccccgtggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaa |
100 |
Q |
| |
|
||||||||| || |||||| |||||| ||| | |||||||| ||||| || || |||||||| |||| |||||| |||||||||| |||| || ||| |
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|
| T |
2350056 |
caccaccaacaaaaccaccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaa |
2350155 |
T |
|
| Q |
101 |
ccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccacc |
200 |
Q |
| |
|
|||||| ||| ||| || || ||||| ||||||||||||||| ||| || ||| ||| ||||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
2350156 |
ccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccacc |
2350255 |
T |
|
| Q |
201 |
acgctctcgttcaaaactcctccgtcttctctg |
233 |
Q |
| |
|
||||||||||||||||||| || ||||||||| |
|
|
| T |
2350256 |
acgctctcgttcaaaactcagccatcttctctg |
2350288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 2302562 - 2302704
Alignment:
| Q |
77 |
cgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttca |
176 |
Q |
| |
|
|||||| ||| | |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
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|
| T |
2302562 |
cgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttca |
2302661 |
T |
|
| Q |
177 |
tctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
219 |
Q |
| |
|
|| |||| ||||||||||||||| | ||||||||||||||| |
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|
| T |
2302662 |
tcgatgaccatgctctggcccaccatgttctcgttcaaaactc |
2302704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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