View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0873_low_3 (Length: 342)
Name: NF0873_low_3
Description: NF0873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0873_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 62 - 332
Target Start/End: Complemental strand, 28234794 - 28234522
Alignment:
| Q |
62 |
atccatatagatattgacaatttatggtaaaaaataataattaattgatttgaattcagggacgcaaatgagtgcctttttgatttgttacatttgtccc |
161 |
Q |
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| T |
28234794 |
atccatatagatattaacaatttatggtaaaaaa--ataattaattgatttgaattcagggacgcaaatgagtgcctttttgatttgttacatttgtccc |
28234697 |
T |
|
| Q |
162 |
ctttatgctttacataggtctgcactat---------tagccaatttgcaattattaaggcacacgaaannnnnnnnnaacagctaggacacatgaattt |
252 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28234696 |
ctttatgctttacataggtctgcactatttaggaacatcgccaatttgcaattattaaggcacacgaattttttttttaacagctaggacacatgaattt |
28234597 |
T |
|
| Q |
253 |
ccatgataaaataaaattgaaaaatcactttctcaattgttccatcttgatcaatcgttagagaatccatttactctctg |
332 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
28234596 |
ccatg-----ataaaattgaaaaatcactttctcaattgttccatcttcatcagtcgttagagaatccatttactctctg |
28234522 |
T |
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