View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0873_low_6 (Length: 311)
Name: NF0873_low_6
Description: NF0873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0873_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 838536 - 838689
Alignment:
| Q |
90 |
tgcatcatgaaatttatttatttatatatatgatgatacaactagacagaagtgtatacaatatttcagagaatcagtgatatattatagctcagtgcac |
189 |
Q |
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| T |
838536 |
tgcatcatgaaatttatttatttatatatatgatgatacaactagacagaagtgtatacaatatttcagagaatcagtgatatattatagctcagtgcac |
838635 |
T |
|
| Q |
190 |
acactccatataggtatttttctcaa---ttgtttttcactctattaatttcat |
240 |
Q |
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| T |
838636 |
acactccatataggtatttttctcaacctttgtttttcactctaataatttcat |
838689 |
T |
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