View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0873_low_7 (Length: 308)
Name: NF0873_low_7
Description: NF0873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0873_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 31247006 - 31247293
Alignment:
| Q |
1 |
tcatcaagaagctccgcaaagcggtgagttatctatttatttatgtaattgttcagtcaatttgttaattcagggaattgattcattttagtggttagag |
100 |
Q |
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| T |
31247006 |
tcatcaagaagctccgcaaggcggtgagttatctatttatttatgtaattgttcagtcaatttgttaattcagggaattaattcattttagtggttagag |
31247105 |
T |
|
| Q |
101 |
ttgtaaaaggaatttggaaaattgtaggatttgttnnnnnnngtggagtaatgttctaattgtgagcaatttggaaattgtttagggtttaggggatgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31247106 |
ttgtaaaaggaatttggaaaattgtaggatttgttaaaaaaagtagagtaatgttctaatggtgagcaatttggaaattgtttagggtttaggggatgga |
31247205 |
T |
|
| Q |
201 |
ttgatttgataatcaccattgatttgcaatagatatattttagtttgttcgcatttgcctttgtattttctgggtgctgtgatgatgt |
288 |
Q |
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||||||||||||||||||||||| ||| ||| ||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
31247206 |
ttgatttgataatcaccattgatctgcgataaatatattatagtttgtttgcatttgccttcgaattttctgggtgctgtgatgatgt |
31247293 |
T |
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