View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0873_low_8 (Length: 293)
Name: NF0873_low_8
Description: NF0873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0873_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 37717936 - 37717684
Alignment:
| Q |
30 |
caaagcttccaacatccaacagatacatttcttccaggtatgaaaatggacataaatttaactttgagttcttggaaaaatgagaacgatccaggaattg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37717936 |
caaagcttccaacatccaacagatacatttcttccaggtatgaaaatggacataaatttagctttgagttcttggaaaaatgagaacgatccaggaattg |
37717837 |
T |
|
| Q |
130 |
gaagcttcgcctttcagaaggcacaaacaggcgaccctcgaagctatagagtaaacaatcagtcacaactttattgggcatttgatggacacaattcaga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37717836 |
gaagcttcgcctttcagaaggcacaaacaggcgaccctcgaagctatagagtaaacaatcagtcacaactttattgggcatttgatggacacaattcaga |
37717737 |
T |
|
| Q |
230 |
taagatgttcaacatcattcttgacttgttggagaactcgacctctaattcat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37717736 |
taagatgttcaacatcattcttgacttgttggagaactcgacctctaattcat |
37717684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 21933219 - 21933255
Alignment:
| Q |
43 |
atccaacagatacatttcttccaggtatgaaaatgga |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21933219 |
atccaacagatacatttcttccaggtatgaaaatgga |
21933255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 171 times since January 2019
Visitors: 6125