View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0874_high_10 (Length: 464)

Name: NF0874_high_10
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0874_high_10
NF0874_high_10
[»] chr8 (7 HSPs)
chr8 (13-464)||(31628900-31629351)
chr8 (205-302)||(31643561-31643658)
chr8 (211-299)||(31650740-31650828)
chr8 (228-355)||(31654226-31654359)
chr8 (211-302)||(31635593-31635684)
chr8 (15-83)||(31654018-31654086)
chr8 (15-80)||(31650535-31650600)


Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Original strand, 31628900 - 31629351
Alignment:
Q  13 cagacattgatcttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatcccgaaaatcaaccatatcaactccatttctc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31628900 cagacattgatcttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatcccgaaactcaaccatatcaactccatttctc 31628999  T
Q  113 ataatgctctcaggtttgatttcagttcaactcaactttctttgtgttattctattctctctttatgattgattgcatctctttctcatctatattctat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31629000 ataatgctctcaggtttgatttcagttcaactcaactttctttgtgttattctattctctctttatgattgattgcatctctttctcatctatattctat 31629099  T
Q  213 gcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagttttgcttcctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31629100 gcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagttttgtttcctt 31629199  T
Q  313 tcttactttttatgataagaattatttgttaatgatctaattatcaaatcacgtaattggaatcaaaatgacatgtgttacggacatttcttgttgaaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31629200 tcttactttttatgataagaattatttgttaatgatctaattatcaaattacgtaattggaatcaaaatgacatgtgttacggacatttcttgttgaaag 31629299  T
Q  413 agtgtccggtgtcctgcatgtgtcaagagtccaaaatagacaccacatcatc 464  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31629300 agtgtccggtgtccttcatgtgtcaagagtccaaaatagacaccacatcatc 31629351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 31643561 - 31643658
Alignment:
Q  205 tattctatgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt 302  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  31643561 tattctatgcagaagtgaagacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctagagcgtttttatatcataattttctggttagtt 31643658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 31650740 - 31650828
Alignment:
Q  211 atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtca 299  Q
    |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31650740 atgcagaaatgaagacgatgacaataagcgttgggttcaaatcatatcgtgggagcctagagcatttttatatcataattttctggtca 31650828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 31654226 - 31654359
Alignment:
Q  228 atgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt--ttgcttcctttcttact---ttt 322  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  ||| |||| ||||| ||   |||    
T  31654226 atgacaataagcgttgggttcaaatcatatcgtgggagcctagagcatttttatatcataattttcttgtcagtttcttgtttcccttcttgcttgcttt 31654325  T
Q  323 ta-tgataagaattatttgttaatgatctaatta 355  Q
    || ||||||| |||||||||||||||||||||||    
T  31654326 tattgataaggattatttgttaatgatctaatta 31654359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 31635593 - 31635684
Alignment:
Q  211 atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt 302  Q
    ||||||| | || ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  31635593 atgcagacgcgatgacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctagagtatttttatatcataattttttggtcagtt 31635684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 31654018 - 31654086
Alignment:
Q  15 gacattgatcttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatccc 83  Q
    ||||||| || |||||||||||||||| |||||||| |||||||| ||| |||||||||| ||||||||    
T  31654018 gacattgttcctcacattgtttgtgactttcacattcctcattcttattatcttaactcttcgtatccc 31654086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 31650535 - 31650600
Alignment:
Q  15 gacattgatcttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtat 80  Q
    ||||||| || |||||||||||||||| |||||||| |||||||| ||| |||||||||| |||||    
T  31650535 gacattgttcctcacattgtttgtgactttcacattcctcattcttattatcttaactcttcgtat 31650600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3014 times since January 2019
Visitors: 6168