View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0874_high_11 (Length: 453)
Name: NF0874_high_11
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 30285211 - 30285498
Alignment:
| Q |
13 |
aatatggtcaattgttattgagcactaattatggataaataatttgattataaatggactgtgatgggtttgacgatttaataagttcaataagaggtct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30285211 |
aatatggtcaattgttattgagcactaattatggataaataatttgattataaatggaccgtgatgggtttgacgatttaataagttcaataagagatct |
30285310 |
T |
|
| Q |
113 |
ctatcttgaatcgtttaactattaaaactttatcactaagacgtttagaaatactgtgaaacctaatctatgaacctaaactttat-------------- |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
30285311 |
ctatcttgaatcgtttaactattaaaactttatcactaagacgtttagaaatactgtgaaacctaatctatgaacctaaagatgatgaggatagtgcagg |
30285410 |
T |
|
| Q |
199 |
-ctctcatagttgctctctcatcggttgtgtcaaatcatatatgtctgacaaaatatgggtagagttacttgacaacaatcaaaatcg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30285411 |
cctctcatagttgctctctcatcggttgtgtcaaatcatatatgtctgataaaatatgggtagagttacttgatgacaatcaaaatcg |
30285498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 30285575 - 30285638
Alignment:
| Q |
362 |
cctggcagacaagcatgggatgaatgatcgattatgagacaagtatatatgaagccaatgaagt |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30285575 |
cctggcagacaagcatgggatgaatgatcgattatgagacaagtatatatgaagccaatgaagt |
30285638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 32007824 - 32007866
Alignment:
| Q |
15 |
tatggtcaattgttattgagcactaattatggataaataattt |
57 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
32007824 |
tatggtcaattgttattaagcactaattattaataaataattt |
32007866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3507 times since January 2019
Visitors: 6174