View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_high_13 (Length: 443)
Name: NF0874_high_13
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 26847351 - 26846955
Alignment:
| Q |
16 |
attgcatagaaattctagataaaaattgtaaatggataagaaaacaaatgatgggagannnnnnnaacagatttttacagaagtttattaacgagtgcct |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26847351 |
attgcatagaaattctagataaaaattgtaaacggataagaaaacaaatgatgggagatttttttaacagatttttacagaagtttattaacgagtgcct |
26847252 |
T |
|
| Q |
116 |
ctacattgtttgatgaatgaaggactagttgaaggaactttgtatccttcaacagcttttgtatgttgcattttcataaccccatctaaagaatcaatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26847251 |
ctacattgtttgatgaatgaaggactagttgaaggaactttgtatccttcaacagcttttgtatgttgcattttcataaccccatctaaagaatcaatt- |
26847153 |
T |
|
| Q |
216 |
ggggaacattcgaattagcactaagctgagggaatctaacttgagattgtggtacccagtcagacatgtttataacttgaagatcttggttccgttcata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26847152 |
-gggaacattcgaattagcactaagctgagggaatctaacttgagattgtggtacccagtcagacatgtttataacttgaagatcttggttctgttcata |
26847054 |
T |
|
| Q |
316 |
ataatcctgaaacaataccaaaaaacatatccaacttattttaattaattgagtagaagaaaaatagctagctaggtcttctgaatactaaaagaaaga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26847053 |
ataatcctgaaacaataccaaaaaacatatccaacttattttaattaattgagtagaagaaaaatagctagctaggtcttctgaatactaaaagaaaga |
26846955 |
T |
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