View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0874_high_17 (Length: 394)
Name: NF0874_high_17
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 28 - 339
Target Start/End: Complemental strand, 42341594 - 42341280
Alignment:
| Q |
28 |
aacataccctgaactcgaaggttctccaactgctccacctccctgtgccaccgtttggtacggtggcgcaacaacgtttagattcccgccgccgccaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341594 |
aacataccctgaactcgaaggttctccaactgctccacctccctgtgccaccgtttggtacggtggcgcaacaacgtttagattcccgccgccgccaata |
42341495 |
T |
|
| Q |
128 |
gcaaatgaagcagcctgaaccattgtagagttgttgttcggatacactgcagcgtaatgctg---ctgcggccggtgagatgacactgctgctgcggtag |
224 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341494 |
gcaaatgaagcagcctgagccattgtagagttgttgttcggatacactgcggcgtaatgctgctgctgcggccggtgagatgacactgctgctgcggtag |
42341395 |
T |
|
| Q |
225 |
gtggtggtgctatggcaaccggcataccagactgttgttccctaactacccctgctttaaccaagaaatcctccaatgtcatctcgccaaaagtcggctg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341394 |
gtggtggtgctatggcaaccggcataccagactgttgttccctaactacccctgctttaaccaagaaatcctccaatgtcatctcgccaaaagtcggctg |
42341295 |
T |
|
| Q |
325 |
tcgaggggtagactc |
339 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42341294 |
tcgaggggtagactc |
42341280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39731934 - 39731901
Alignment:
| Q |
1 |
caaaatgcaattacagttttgaaaacaaacatac |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39731934 |
caaaatgcaattacagttttgaaaacaaacatac |
39731901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 16811286 - 16811243
Alignment:
| Q |
275 |
cctgctttaaccaagaaatcctccaatgtcatctcgccaaaagt |
318 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
16811286 |
cctgctttcaccaagaaatcctccaatgtcatctctcctaaagt |
16811243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2892 times since January 2019
Visitors: 6167