View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_high_18 (Length: 368)
Name: NF0874_high_18
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 46108536 - 46108199
Alignment:
| Q |
1 |
atggtacatccagtattccatcccggccatccaatgtatgttgtggcaaaaatatcaccggcaaagatcgcagaactacaaagagcgctccagcaaggat |
100 |
Q |
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| T |
46108536 |
atggttcatccagtattccatcccggccatccaatgtatgttgtggcaaaaatatcaccggcaaagatcgcagaactacaaagagcgctccagcaaggat |
46108437 |
T |
|
| Q |
101 |
tatagtaatagttggaaggaagtatgtagatatcttggtacgtatctgggttgatgacagtcaaagttataaactcagaatgacagtaaacaaacatatt |
200 |
Q |
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| T |
46108436 |
tatagtaatagttggaaggaagtatgtagatatcttggtacgtatctgggttgatg-cagtcaaagttataaactcagaatgacagtaaacaaacatatt |
46108338 |
T |
|
| Q |
201 |
gagtaatttatttagtttttcagagaaattagaatggtgtacgtacctcaagaatgacgagtgcggcacatatacgacagagcatggagtaacctaggaa |
300 |
Q |
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| T |
46108337 |
gagtaatttatttagtttttcagagaaattagaatggtgtacgtacctcaagaatgacgagtgcggcacataaacgacagagcatggagtaacctaggaa |
46108238 |
T |
|
| Q |
301 |
gtgcatgcacgagtccacaacaataagacataaaatatt |
339 |
Q |
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| T |
46108237 |
gtgcatgcacgagtccacaacaataagacataaaatatt |
46108199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 46108127 - 46108057
Alignment:
| Q |
172 |
aactcagaatgacagtaaacaaacatattgagtaatttatttagtttttcagagaaattagaatggtgtac |
242 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||| |
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| T |
46108127 |
aactcagaatgacagtaaacaaacatattgaatgatttatttagtttttcagacaaaatagaatggtgtac |
46108057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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