View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_high_2 (Length: 622)
Name: NF0874_high_2
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_high_2 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 16108 - 15602
Alignment:
| Q |
18 |
ggcatggtttatgtccgaaagtagtagaggtatgattgactcacattccttcaactgggcagcttcatcgattactaaaacatctagtggttccatgtca |
117 |
Q |
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| T |
16108 |
ggcatggcgtatgttcggaagtagtagaggtatgatagattcacattctttcagctgtgcagcttcatcaatcactaaaatgtctagtggcttcatggca |
16009 |
T |
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| Q |
118 |
acagaatgcagcttaaaggaactagaagcagtggaaaatattaataaagatgattgtaaacagaactctctgattgactcttcagtcacaacatctggaa |
217 |
Q |
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| T |
16008 |
acagaatgcagcttaaaggaactagaagcagtggaaaaaattaatgaagacgattgtaaacagaactctctggttgactcttcatccacaacatctggca |
15909 |
T |
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| Q |
218 |
ggttgaggtcaccaagtgaaactttaagggttcttaatagagaaaggcattccgttctgctctggtgcaatgagtattcagcagcacttacaacaactga |
317 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15908 |
ggttaaggtcaccaagtgaaactttaagggttctcaatagagaaaggcattcggttctgctctggtgcaatgagtattcagcagcacttacaacagctga |
15809 |
T |
|
| Q |
318 |
ctcgaaagaactgtgttgactttctggaggagagaaaagctcttccaatttttcacaaacaatgttattttcaaacaacaaagcttgaaatgaaccgaga |
417 |
Q |
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| | |||||||||||||||||||| |||||||||||| | ||||||| |||| || | ||||| ||||||| ||||| |||||||||||||||||||||| |
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| T |
15808 |
cccaaaagaactgtgttgactttcaggaggagagaaatgttcttccagttttacagagacaatattatttttaaacagcaaagcttgaaatgaaccgaga |
15709 |
T |
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| Q |
418 |
gagtaaataagacgagccaaatctttcaagttatgttccataatacaacttctggcaatatgagtacataagatggagatgcagtctctgagtggcgatg |
517 |
Q |
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||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| || |
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| T |
15708 |
gagtaaataaggtgggtcaaatctttcaagttatgttccataatacaacttctggctatatgagtacataagatggaaatacagtctctgagtggcaata |
15609 |
T |
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| Q |
518 |
ctatagc |
524 |
Q |
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||||||| |
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| T |
15608 |
ctatagc |
15602 |
T |
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