View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_high_3 (Length: 605)
Name: NF0874_high_3
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 9 - 576
Target Start/End: Original strand, 48279969 - 48280536
Alignment:
| Q |
9 |
agcataggatagtgatactttcaattcatcaacctagctatagaatattgcaatatatttctaagttcttgatcctttctcatggttcagtagttcataa |
108 |
Q |
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| T |
48279969 |
agcaaaggatagtgatactttcaattcatcaacctagctatagaatattgcaatatatttctaagttcttgatcctttctcatggttcagtagttcataa |
48280068 |
T |
|
| Q |
109 |
tggtagtttggaatcactagaggaaagaatatctaatttgggatttcaaattccattgcaacttaatgcccttgaattttcaatggaaattatacaaagt |
208 |
Q |
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| T |
48280069 |
tggtagtttggaatcactagaggaaagaatatctaatttgggatttcaaattccattgcaacttaatgcccttgaattttcaatggaaattatacaaagt |
48280168 |
T |
|
| Q |
209 |
ttagaagataattctagtagttccatcgtccacgaagacaaaacttcttttccaagttccatgtgggcgccagaggaagaaaacattggaagcaacgttt |
308 |
Q |
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| T |
48280169 |
ttagaagataattctagtagtttcatcgtccacgaaaacgaaacttcttttccaagttccatgtgggcgccagaggaagaaaacattggaagcgacgttt |
48280268 |
T |
|
| Q |
309 |
tccaatcacaatatgaaaaggaaagttttggacatctttgttatgtaaacatgatggagatactatttttgtgttcaagattttggaagattatttatag |
408 |
Q |
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| T |
48280269 |
tccaatcacaatatgaaaaggaaaattttggacatctttgttatgtaaacatgatggagatactatttttgtgttcaagattttggaagattatttatag |
48280368 |
T |
|
| Q |
409 |
aacaaagcaacnnnnnnnagctagaacaatgcaagcattagttggtggatttggtttagcaagtgtttatataaaagtaagaaaagatgaagacggaatt |
508 |
Q |
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| T |
48280369 |
aacaaagcaactttttttagctagaacaatgcaagcattagttggtggatttggtttagcaagtgtttatataaaggtaagaaaagatgaagacggaatt |
48280468 |
T |
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| Q |
509 |
gcagaaaggttaggtctgtttgcatttagtctcagttttctcttgtcttcaacagttgaagcacttcc |
576 |
Q |
| |
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| T |
48280469 |
gcagaaaggttaggtctgtttgcatttagtctcagttttctcttgtcttcaacagttgaagcacttcc |
48280536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 297; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 9 - 459
Target Start/End: Original strand, 14336369 - 14336819
Alignment:
| Q |
9 |
agcataggatagtgatactttcaattcatcaacctagctatagaatattgcaatatatttctaagttcttgatcctttctcatggttcagtagttcataa |
108 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
14336369 |
agcaaaggatagttatactttcaattcatcaacctagctatagaatattgcaatatatttccaagttcttgatcctttctcatggttcactagttcataa |
14336468 |
T |
|
| Q |
109 |
tggtagtttggaatcactagaggaaagaatatctaatttgggatttcaaattccattgcaacttaatgcccttgaattttcaatggaaattatacaaagt |
208 |
Q |
| |
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| T |
14336469 |
tggtagtttggaatcactagaggaaagaatatccaatttgggatttcaaattccaatgcaacttaatgcccttgaattttcaatggaaattatacaaagt |
14336568 |
T |
|
| Q |
209 |
ttagaagataattctagtagttccatcgtccacgaagacaaaacttcttttccaagttccatgtgggcgccagaggaagaaaacattggaagcaacg--- |
305 |
Q |
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|||||||||| | ||||||||||||||||| || || || ||||||||||||||||||||||||| ||||| ||||||| |||||||| | | |
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| T |
14336569 |
ttagaagatagtactagtagttccatcgtcgacaaaaacgaaacttcttttccaagttccatgtg---accagaagaagaaattattggaagtcatgaaa |
14336665 |
T |
|
| Q |
306 |
ttttccaatcacaatatgaaaaggaaagttttggacatctttgttatgtaaacatgatggagatactatttttgtgttcaagattttggaagattattta |
405 |
Q |
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||||||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14336666 |
ttttccaattacaatatgaaaatgaaagttttggatatctttgttatgtaatcatgatggagatactatttctgtgttcaagattttggaagattattta |
14336765 |
T |
|
| Q |
406 |
tagaacaaagcaacnnnnnnnagctagaacaatgcaagcattagttggtggatt |
459 |
Q |
| |
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| || ||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
14336766 |
tcgagcaaagcaactttttttagcaagaacaatgcaagcattagttggtggatt |
14336819 |
T |
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