View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_high_40 (Length: 236)
Name: NF0874_high_40
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 13399253 - 13399068
Alignment:
| Q |
14 |
cacagatctgataatgtaactcgataatacttttaggatcaacgatattttcccacctgaagtaaacaaattaaaacggctcagattaatgaaagacacg |
113 |
Q |
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| T |
13399253 |
cacagatctgataatgtaactcgatagtacttttaggatcaacgatattttcccacctgaagtaaacaaattaaaacggcttagattaatgaaagagatg |
13399154 |
T |
|
| Q |
114 |
tgattccaaacctggtttcttctgcaaaattgatgcaataactaggttttataaaacaaattaaaattgcagacaacacaagataaattgt |
204 |
Q |
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| T |
13399153 |
tgattccaaacctggtttcttctgcaaaattgatgcaataactaggttttataaaac-----aaaattgcagacaacacaagataaattgt |
13399068 |
T |
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