View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_high_9 (Length: 464)
Name: NF0874_high_9
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 33 - 454
Target Start/End: Complemental strand, 28919082 - 28918651
Alignment:
| Q |
33 |
agtccccttact---gctttctaagggttattgttgttcacactatcctttgtgtcctaataataatcatcagttcatcacaagttagaagaacttcctt |
129 |
Q |
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| T |
28919082 |
agtccccttactatagctttctaagggttattgttgttcacactatcctttgtgtcctaataataatcatcagttcatcacaagttagaagaacttcctt |
28918983 |
T |
|
| Q |
130 |
gcattgaatgcacatttcttggatactcttgagcccataatgtttaaatgcttgtcccatatggcagggtctacatttctaatctcaggatgtcttgttt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28918982 |
gcattgaatgcacatttcttggatactcttgagcccataatgtttaaatgcttgtcccatatggcagggtctacatttctaatctcaggatgtcttgttt |
28918883 |
T |
|
| Q |
230 |
aatgggtttggtttccctagtcttcataggttagattcacacctcaaccagatcctctatccctatttatgcccagcttctgtaactgttagc------- |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28918882 |
aatgggtttggtttccctagtcttcataggttagattcacacctcaaccagatcctctatccctatttatgcccagcttctgtaactgttagctgctagc |
28918783 |
T |
|
| Q |
323 |
tgctctgtgtctattgcaattgtaacaccattcgataaagttactttgctgtcttctgatgtaatgcagactcgattactgctctctggtcttttaatct |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28918782 |
tgctctgtgtctattgcaattgtaacaccattcgataaagttactttgctgtcctctgatgtaatgcagactcgattactgctctctggtcttttaatct |
28918683 |
T |
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| Q |
423 |
actttttcacaattttagatacacggtctctg |
454 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
28918682 |
actttttcacaattttagatacacagtctctg |
28918651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 451
Target Start/End: Complemental strand, 28918632 - 28918596
Alignment:
| Q |
415 |
tttaatctactttttcacaattttagatacacggtct |
451 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
28918632 |
tttaatctactttttcacaattgtagatacacggtct |
28918596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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