View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0874_low_1 (Length: 702)

Name: NF0874_low_1
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0874_low_1
NF0874_low_1
[»] chr3 (15 HSPs)
chr3 (309-673)||(52039846-52040209)
chr3 (139-308)||(548327-548496)
chr3 (6-120)||(42656164-42656282)
chr3 (139-224)||(40131990-40132075)
chr3 (16-97)||(52040529-52040610)
chr3 (139-224)||(782838-782922)
chr3 (136-224)||(10018774-10018861)
chr3 (136-224)||(10256088-10256175)
chr3 (95-137)||(52040206-52040248)
chr3 (136-224)||(10123314-10123401)
chr3 (154-221)||(10744818-10744885)
chr3 (139-176)||(17743104-17743141)
chr3 (139-176)||(19044424-19044461)
chr3 (221-253)||(42656291-42656323)
chr3 (138-177)||(10661755-10661794)
[»] chr2 (6 HSPs)
chr2 (139-308)||(600485-600655)
chr2 (139-220)||(31269463-31269543)
chr2 (139-177)||(24038363-24038401)
chr2 (139-177)||(24039558-24039596)
chr2 (139-177)||(31180317-31180355)
chr2 (245-282)||(24101671-24101708)
[»] chr1 (3 HSPs)
chr1 (139-310)||(2427196-2427369)
chr1 (229-294)||(50549390-50549455)
chr1 (147-211)||(25189165-25189229)
[»] chr7 (5 HSPs)
chr7 (139-224)||(25432120-25432205)
chr7 (139-177)||(41832706-41832744)
chr7 (494-599)||(13928349-13928451)
chr7 (139-177)||(8083389-8083427)
chr7 (139-177)||(41830300-41830338)
[»] scaffold0005 (1 HSPs)
scaffold0005 (212-294)||(58501-58582)
[»] chr4 (6 HSPs)
chr4 (212-294)||(14781148-14781229)
chr4 (145-224)||(7785283-7785362)
chr4 (139-220)||(2547078-2547158)
chr4 (255-308)||(51811762-51811815)
chr4 (260-308)||(51811813-51811861)
chr4 (138-177)||(21215020-21215059)
[»] chr6 (5 HSPs)
chr6 (146-224)||(1136235-1136313)
chr6 (212-297)||(3064795-3064881)
chr6 (139-220)||(6825508-6825588)
chr6 (138-177)||(30689633-30689672)
chr6 (139-177)||(8655827-8655865)
[»] scaffold0655 (1 HSPs)
scaffold0655 (140-224)||(698-782)
[»] chr5 (7 HSPs)
chr5 (212-303)||(31692845-31692937)
chr5 (138-177)||(43233925-43233964)
chr5 (138-176)||(41949332-41949370)
chr5 (139-220)||(21254206-21254286)
chr5 (139-176)||(41951731-41951768)
chr5 (125-177)||(21256720-21256771)
chr5 (139-177)||(26873161-26873199)
[»] scaffold0959 (1 HSPs)
scaffold0959 (138-178)||(407-447)
[»] scaffold0023 (1 HSPs)
scaffold0023 (138-178)||(111543-111583)
[»] chr8 (3 HSPs)
chr8 (138-176)||(5690859-5690897)
chr8 (135-224)||(3567484-3567572)
chr8 (139-168)||(12464815-12464844)
[»] scaffold0862 (1 HSPs)
scaffold0862 (139-177)||(322-360)
[»] scaffold0525 (1 HSPs)
scaffold0525 (139-177)||(2028-2066)
[»] scaffold0001 (1 HSPs)
scaffold0001 (139-220)||(144661-144741)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 309 - 673
Target Start/End: Complemental strand, 52040209 - 52039846
Alignment:
Q  309 attgcagctattgtaggtatatatata--ctctgcatcgatttgcnnnnnnncattgcagctattgtggtaattcttcttccccattggtgtatcttatg 406  Q
    |||||||||||||||| ||||||||||  |||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52040209 attgcagctattgtagatatatatatatactctgcatcggtttgctttttttcattgcagctattgtggtaattcttcttccccattggtgtatcttctg 52040110  T
Q  407 cggcnnnnnnngctctacagcagacattgtttggcttgtaaacaatatggttaggaaaatacgtttcactttcaaactataaagtttatttccaaagttt 506  Q
    ||||       ||||||||  |||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  52040109 cggcaaaaaaagctctacaatagacattgtttggcttctaaacaatacgattaggaaaatacgtttcaccttcaaactataaagttgatttccaaagttt 52040010  T
Q  507 attcttccaaacttatcatgttgttggctattaatgtttgcaagatagttttgatattcattatttgatgattgttattttgtattcgcaaatcaacccc 606  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52040009 attcttccaaacttatcatgttg---gctattaatgtttgcaagatagttttgatattcattatttgatgattgttattttgtattcgcaaatcaacccc 52039913  T
Q  607 gttacatacaattgagtaaataaaagaatgcagacaagtgaaatgcatcaaattgaagggttcaaat 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52039912 gttacatacaattgagtaaataaaagaatgcagacaagtgaaatgcatcaaattgaagggttcaaat 52039846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 139 - 308
Target Start/End: Complemental strand, 548496 - 548327
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgagaaagttagttacaa 238  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  548496 tgttagaaaacttggcatccatggaaggaatgagagaaatagatcaaagttcttagtattgatggaaaatgaatattacaaatgagaaagttagttacta 548397  T
Q  239 tgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaacatacatctctaata 308  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  548396 tgtgataccttaagcctatttataggcactaactaactagtaattatatgactaacatatatctctaata 548327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 42656164 - 42656282
Alignment:
Q  6 ctccaacaatattcaaatttgaataagagtcatggagt---ataacctattggatacagttccaatgc-nnnnnnncggtgcctcattattactaccatt 101  Q
    |||||| || ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||        | ||||||||||||||||||||||    
T  42656164 ctccaataacattcaaatttgaataagagtcatggagtataataacctattggatacagttccaatgcaaaaaaagcagtgcctcattattactaccatt 42656263  T
Q  102 tttcaatgctttattgtgg 120  Q
    |||||||||| ||||||||    
T  42656264 tttcaatgctctattgtgg 42656282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 40132075 - 40131990
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||| |||||||||||||||||    
T  40132075 tgttatgaaatatggcatctatggaaggaatgagagaaatagatcaaagttttttgtattgataaaaattgaatattacaaatgag 40131990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 52040610 - 52040529
Alignment:
Q  16 attcaaatttgaataagagtcatggagtataacctattggatacagttccaatgcnnnnnnncggtgcctcattattactac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||    
T  52040610 attcaaatttgaataagagtcatggagtataacctattggatacaattccaatgcaaaaaagcggtgcctcattattactac 52040529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 782838 - 782922
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    |||||||||||||| ||||||||||||||| |||||||||  | ||||  ||||||||||||| ||||  ||||||||||||||||    
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaa-ctctttgtattgatagaaatggaatattacaaatgag 782922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 10018774 - 10018861
Alignment:
Q  136 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||||||||||||||||||||||||||| ||| ||||||||   | ||||  ||||||||||||||||||   |||||||||||||||    
T  10018774 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaa-ctctttgtattgatggaaatgaaatattacaaatgag 10018861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 10256088 - 10256175
Alignment:
Q  136 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||||||||||||||||||||||||||| ||| ||||||||   | |||| || ||||||||||||||||   |||||||||||||||    
T  10256088 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactt-tttgtattgatggaaatgaaatattacaaatgag 10256175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 52040248 - 52040206
Alignment:
Q  95 taccatttttcaatgctttattgtgggagttcttttttcattg 137  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  52040248 taccatttttcaatgctctattgtgggagttcttttttcattg 52040206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 10123314 - 10123401
Alignment:
Q  136 tgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    |||||||||||||||||||||||||| || ||| ||||||||   | ||||  ||||||||||||||||||   |||||||||||||||    
T  10123314 tgttgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaa-ctctttgtattgatggaaatgaaatattacaaatgag 10123401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 10744885 - 10744818
Alignment:
Q  154 catccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaat 221  Q
    ||||||| |||||||||||||||||  |  |||| |||||||||||||||||| ||||||||| ||||    
T  10744885 catccatagaaggaatgagagaaatgtagtaaagctctttgtattgatggaaattgaatattataaat 10744818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 17743141 - 17743104
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17743141 tgttaggaaacatggcatccatgaaaggaatgagagaa 17743104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 19044461 - 19044424
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19044461 tgttaggaaacatggcatccatgaaaggaatgagagaa 19044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 42656291 - 42656323
Alignment:
Q  221 tgagaaagttagttacaatgtgacaccttaagc 253  Q
    |||||||||||||||||||||||||||||||||    
T  42656291 tgagaaagttagttacaatgtgacaccttaagc 42656323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 10661755 - 10661794
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  10661755 ttgttaggaaacatgacatccatggaaagaatgagagaaa 10661794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 139 - 308
Target Start/End: Original strand, 600485 - 600655
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatag--atcaaagttctttgtattgatggaaaatgaatatta---caaatgagaaagttagt 233  Q
    |||||||||||||| |||||||| |||||| |||||||| ||  || |||||  |||  ||||||||||| |||||||||   ||| ||| |||||||||    
T  600485 tgttaggaaacatgacatccatgaaaggaaagagagaaa-agttatgaaagtatttt--attgatggaaa-tgaatattattacaattgacaaagttagt 600580  T
Q  234 tacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaacatacatctctaata 308  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  600581 tacaatgtgacaccttaagcctatttataggcactaactaactagtaactatatgactaacatatatctctaata 600655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 31269463 - 31269543
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    |||||||||||||||||||||||||||||| ||||||||   |  |||  ||||| |||||||||||| |||||||||||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaattgaatattacaaa 31269543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 24038401 - 24038363
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24038401 tgttagaaaacatggcatccatggaaggaatgagagaaa 24038363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 24039596 - 24039558
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24039596 tgttagaaaacatggcatccatggaaggaatgagagaaa 24039558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 31180355 - 31180317
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  31180355 tgttaggaagcatggcatccatggaaggaaggagagaaa 31180317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 24101671 - 24101708
Alignment:
Q  245 accttaagcatatttataggcactaactaactagtaac 282  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  24101671 acctcaagcctatttataggcactaactaactagtaac 24101708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 2427369 - 2427196
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatag--atcaaagttctttgtattgatggaaaatgaatatta---caaatgagaaa-gttag 232  Q
    ||||||||||||||||||||||||||||||||||||||| ||  || |||||   ||  ||||||||||| |||||||||   ||| || |||| ||| |    
T  2427369 tgttaggaaacatggcatccatggaaggaatgagagaaa-agctataaaagtaactt--attgatggaaa-tgaatattattacaattgggaaaagttgg 2427274  T
Q  233 ttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaacatacatctctaataat 310  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  2427273 ttacaatgtgacaccttaagcctatttataggcactaactaactagtaactatatgactgatatatatctctaataat 2427196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 50549390 - 50549455
Alignment:
Q  229 ttagttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaac 294  Q
    |||||||||||||||||||| || | ||||||||| ||||| ||||||| |||||| |||||||||    
T  50549390 ttagttacaatgtgacacctcaaacttatttatagacactagctaactactaactagatgactaac 50549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 25189229 - 25189165
Alignment:
Q  147 aacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaa 211  Q
    |||||||||||| ||||||||||||||||||   |  ||||||  ||||||||||||||| ||||    
T  25189229 aacatggcatccgtggaaggaatgagagaaaagtagtaaagtttattgtattgatggaaattgaa 25189165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 25432205 - 25432120
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||| ||||||||||||||||||||||||||||||||||  | ||||||||||| |||||||||||| |||||||||| ||||||    
T  25432205 tgttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattacgaatgag 25432120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 41832744 - 41832706
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaa 41832706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 599
Target Start/End: Original strand, 13928349 - 13928451
Alignment:
Q  494 atttccaaagtttattcttccaaac-ttatcatgttgttggctattaatgtttgcaagatagttttgatattcattatttgatgattgttattttgtatt 592  Q
    ||||||||||||||  ||||||||  ||||||||||||||||| |  |||||| ||||||||||||||| || | |||||| ||||||||| ||| ||||    
T  13928349 atttccaaagttta--cttccaaaaattatcatgttgttggctct--atgtttccaagatagttttgatttttactatttgttgattgttagtttctatt 13928444  T
Q  593 cgcaaat 599  Q
     ||||||    
T  13928445 ggcaaat 13928451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 8083389 - 8083427
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaa 8083427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 41830338 - 41830300
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaaa 41830300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 58582 - 58501
Alignment:
Q  212 tattacaaatgagaaagttagttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaac 294  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||  ||||||||    
T  58582 tattacaaaagagaaagttagttacaatgtggcaccttaagcctatttata-gcactaactaactagtaactaggtgactaac 58501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 14781148 - 14781229
Alignment:
Q  212 tattacaaatgagaaagttagttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaac 294  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||  ||||||||    
T  14781148 tattacaaaagagaaagttagttacaatgtggcaccttaagcctatttata-gcactaactaactagtaactaggtgactaac 14781229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 7785283 - 7785362
Alignment:
Q  145 gaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    |||||||  |||||||||||||||||| |||||||  |||||| |||||||||||||||||| |||||||||||||||||    
T  7785283 gaaacattacatccatggaaggaatgaaagaaatatgtcaaagctctttgtattgatggaaattgaatattacaaatgag 7785362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 2547158 - 2547078
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    |||||||||||||| ||||||||||||||| |||||||||  | ||||  ||||||||||||| ||||  ||||||||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaa-ctctttgtattgatagaaatggaatattacaaa 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 51811815 - 51811762
Alignment:
Q  255 tatttataggcactaactaactagtaactatatgactaacatacatctctaata 308  Q
    ||||||||||||||||||||||||||| |||||||| ||| || ||||||||||    
T  51811815 tatttataggcactaactaactagtaagtatatgaccaacgtatatctctaata 51811762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 51811813 - 51811861
Alignment:
Q  260 ataggcactaactaactagtaactatatgactaacatacatctctaata 308  Q
    |||||||||||||||||||||| |||||||| ||| || ||||||||||    
T  51811813 ataggcactaactaactagtaagtatatgaccaacgtatatctctaata 51811861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 21215059 - 21215020
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  21215059 ttgttagtaaacatgacatccatggaaggaatgagagaaa 21215020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 1136235 - 1136313
Alignment:
Q  146 aaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||||| |||||||||||||||||||||||||| | ||||  ||||| |||||||||||| |||||||||||||||||    
T  1136235 aaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattacaaatgag 1136313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 3064795 - 3064881
Alignment:
Q  212 tattacaaatgagaaa-gttagttacaatgtgacaccttaagcatatttataggcactaactaactagtaactatatgactaacata 297  Q
    |||||| ||||||||| | || |||||||| | || ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  3064795 tattaccaatgagaaaagataattacaatggggcatcttaagcctatttatagccactaactaactagtaactatatgactaacata 3064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 6825508 - 6825588
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    |||||||||||||||||||||||||||||| |||| ||||  | ||||  ||||||||||||| ||||  ||||||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataaatctaacaaa-ctctttgtattgatagaaatggaatattacaaa 6825588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 30689633 - 30689672
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  30689633 ttgttaggaaacatggcatccatgaaaggaatgagagaaa 30689672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 8655827 - 8655865
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  8655827 tgttaggaaacatggcatccatagaaggaaggagagaaa 8655865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 782 - 698
Alignment:
Q  140 gttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    ||||||||||||||||||| | ||||||||||||||||   |  |||| |||||||||||||||||| ||||||||| |||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaaaagtagtaaagctctttgtattgatggaaattgaatattaaaaatgag 698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 31692845 - 31692937
Alignment:
Q  212 tattacaaatgagaaagttagttacaatgtgac-accttaagcatatttataggcactaactaactagtaactatatgactaacatacatctc 303  Q
    |||| |||||||||||||| |||||||| | || |||| || | |||||||||||||||||||||||||||||| ||||||||| || |||||    
T  31692845 tattgcaaatgagaaagttggttacaatttaactacctcaaacctatttataggcactaactaactagtaactagatgactaacttatatctc 31692937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 43233964 - 43233925
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43233964 ttgttaggaaacatggcatccatggaaggaatgagagaaa 43233925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 41949332 - 41949370
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41949332 ttgttaggaaacatggcatccatggaaggaatgagagaa 41949370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 21254286 - 21254206
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    |||||||||||||||||||||||||||||| ||||||||   | ||||  ||||| |||||||| |||| ||||||||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaa-ctctttctattgatgaaaaaggaatattacaaa 21254206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 41951731 - 41951768
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 21256771 - 21256720
Alignment:
Q  125 tcttttttcattgttgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  21256771 tcttttttcaatgt-gttaggaaacatggcatccatggaaggaaggagagaaa 21256720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 26873161 - 26873199
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaaa 26873199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 407 - 447
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaat 178  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  407 ttgttaggaaacaaggcatccatggaaggaatgagagaaat 447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 111543 - 111583
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaaat 178  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  111543 ttgttaggaaacatggcatccatggaaggaaggagagaaat 111583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 5690897 - 5690859
Alignment:
Q  138 ttgttaggaaacatggcatccatggaaggaatgagagaa 176  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  5690897 ttgttatgaaacatggcatccatggaaggaatgagagaa 5690859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 3567484 - 3567572
Alignment:
Q  135 ttgttgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaatgag 224  Q
    |||||| ||| ||||||| ||||| ||||||||| || ||||||  | |||| | ||||||||||||| |||  ||||||||||||||||    
T  3567484 ttgttggtagaaaacatgacatccgtggaaggaaggaaagaaatctaacaaact-ctttgtattgatgaaaatggaatattacaaatgag 3567572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 12464844 - 12464815
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaa 168  Q
    ||||||||||||||||||||||||||||||    
T  12464844 tgttaggaaacatggcatccatggaaggaa 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 360 - 322
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  360 tgttaggaaacatggcatccatgaaaggaaggagagaaa 322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 2028 - 2066
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaa 177  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  2028 tgttgggaaacatggcatccatggaaggaaggagagaaa 2066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 144661 - 144741
Alignment:
Q  139 tgttaggaaacatggcatccatggaaggaatgagagaaatagatcaaagttctttgtattgatggaaaatgaatattacaaa 220  Q
    ||||||||||||||||||| |||||||||| |||| ||||  | ||||  ||||| ||||||| ||||  ||||||||||||    
T  144661 tgttaggaaacatggcatctatggaaggaaggagataaatctaacaaa-ctctttatattgatagaaatggaatattacaaa 144741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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