View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_11 (Length: 501)
Name: NF0874_low_11
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 472
Target Start/End: Original strand, 5384259 - 5384726
Alignment:
| Q |
11 |
cataggtatctgtctatagcagagtgaaagttgtataagtatatagagaagcttttgattttgtttagagaaattatgtaaaacaagtgcttcaatgaac |
110 |
Q |
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| T |
5384259 |
cataggtatctgtctatagtagagtgaaagttgtataagtatatagagaagcttttgattttgtttagagaaattatgtaaaacaagtgcttcaatgaac |
5384358 |
T |
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| Q |
111 |
ttaattgattacacttgagagatttctgtgatctacaaatggatgaaattgaaatagcttattgtaaggtggtccaactct------ctctctccaattg |
204 |
Q |
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| T |
5384359 |
ttaattgattacacttgagagatttctgtgatctacaaatggatgaaattgaaatagcttattgtaaggtggtccaactctctctctctctctccaattg |
5384458 |
T |
|
| Q |
205 |
ttgaatgtgcatgaacttgcatgtgatgagaagaaaacaaacatgtgatcatgattgtcttctgaactagaaaacaatgaaaatgataacacataccaca |
304 |
Q |
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| T |
5384459 |
ttgaatgtgcatgaacttgcatgtgatgagaagaaaacaaacatgtgatcatgattgtcttctgaactagaaaacaatgaaaatgataacacataccaca |
5384558 |
T |
|
| Q |
305 |
gttacctttaaacattaatgtagtgtaaaatcagagatgtcaattttttctctctttttgaattttcaacttctgaagcatttaagatcaaatttaaaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5384559 |
gttacctttaaacattaatgtagtgtaaaatcagagatgtcaattttttctctctttttgaattttcaacttctgaagcatttaagatcaaatttaaaaa |
5384658 |
T |
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| Q |
405 |
ccaagttggctgatgttgacaatgtcatatcnnnnnnngaattcttgatttctgtagcttgtaaaaga |
472 |
Q |
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| T |
5384659 |
ccaagttggctgatgttgacaatgtcatatctttttttgaattcttgatttctgtagcttgtaaaaga |
5384726 |
T |
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