View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_12 (Length: 500)
Name: NF0874_low_12
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 25 - 481
Target Start/End: Complemental strand, 40635139 - 40634682
Alignment:
| Q |
25 |
catcaaagaatataaaggtatcactgtcatttatcaaatgagatgctaaaccgtgatcaggtacagattcacaaaatggtcaaaattatgttaagaactc |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635139 |
catcaaagaatataaaggtatcactgtcatttatcaaatgaaatgctaaactgtgatcaggtacagattcacaaaatggtcaaaattatgttaagaactc |
40635040 |
T |
|
| Q |
125 |
agatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacagttccaacttttacatactgtt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635039 |
agatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacagttccaacttttacatactgtt |
40634940 |
T |
|
| Q |
225 |
gcgatggaaatttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaacacagccatttgaagatcaagatattc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40634939 |
gcgatggaaatttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaacacagccatttgaagatcaagatattc |
40634840 |
T |
|
| Q |
325 |
ttctaagcgaattaacaactgatatatgatca-tttgaataaataaatatttaggcacaaaagacttatgaatcatttagctttgtttgacttagtacgc |
423 |
Q |
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| T |
40634839 |
ttctaagcgaattaacaattgatatatgatcattttgaataaataaatatttaggcacaaaagacttatgaatcatttagctttgtttgacttagtacgc |
40634740 |
T |
|
| Q |
424 |
ataatttgtggtatccgacatttatacaagaatttctcatgaaggccagctcttagtg |
481 |
Q |
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| T |
40634739 |
ataatttgtggtatccgacatttatacaagaatttctcatgaaggccagctcttagtg |
40634682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 104 - 299
Target Start/End: Complemental strand, 40646892 - 40646698
Alignment:
| Q |
104 |
tcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacag |
203 |
Q |
| |
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||||| |||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40646892 |
tcaaatttatgttaagaactcaaatattatg-tacctgaatttctgttctcaaacaaccatgtagagctaccactgtatacccgaattgacgaagaacag |
40646794 |
T |
|
| Q |
204 |
ttccaacttttacatactgttgcgatggaaatttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaaca |
299 |
Q |
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| T |
40646793 |
ttccaacttttacatactgttgacatggaaatttgtgacagtacctaaaatgccttggctcccaacttccatgtaatgcctgcacagttcaaaaca |
40646698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 136 - 298
Target Start/End: Original strand, 4780843 - 4781005
Alignment:
| Q |
136 |
tacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacagttccaacttttacatactgttgcgatggaaat |
235 |
Q |
| |
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|||||||||||| | ||||||||||||||| ||||||||||| || || || ||||| |||||||||| ||||||||||||||| || ||| |||||||| |
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| T |
4780843 |
tacctgaatttcggatctcaaacagccatgcagagctaccacggtgtagccaaattgacgaagaacagctccaacttttacatattgctgccatggaaat |
4780942 |
T |
|
| Q |
236 |
ttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |
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|
| T |
4780943 |
ttgtgacagtacctagaatgccttggctcccaacttgcatgcaacgcctggccaattcaaaac |
4781005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 472
Target Start/End: Complemental strand, 31134536 - 31134504
Alignment:
| Q |
440 |
gacatttatacaagaatttctcatgaaggccag |
472 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
31134536 |
gacatttatacaagaatttctcatgaagaccag |
31134504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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