View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_13 (Length: 465)
Name: NF0874_low_13
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_13 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 21 - 465
Target Start/End: Original strand, 50307200 - 50307641
Alignment:
| Q |
21 |
acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaataatgaagaaacaacagaaacaa |
120 |
Q |
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| T |
50307200 |
acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaat---gaagaaacaacagaaacaa |
50307296 |
T |
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| Q |
121 |
tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca |
220 |
Q |
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| T |
50307297 |
tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca |
50307396 |
T |
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| Q |
221 |
tgatcaagttgaaagtgtgcatgagattaatcaacctcatgatcaagttgtggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaaat |
320 |
Q |
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| T |
50307397 |
tgatcaagttgaaagtgtgcatgagattaatcaacctcatgatcaagttgtggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaaat |
50307496 |
T |
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| Q |
321 |
atacctgagattaatcaatcacatcaagctgaggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaat |
420 |
Q |
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| T |
50307497 |
atacctgagattaatcaatcacatcaagccgaggaagtagaaaaaattgagaatattcaagaacgcgatcaagttgataatgtacctgagattaatcaat |
50307596 |
T |
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| Q |
421 |
cacatcaagctgaggaagtagaaaaaattgagaatattcaagaac |
465 |
Q |
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| T |
50307597 |
cacatgaagctggggaagtagaaaaaattgagaatattctagaac |
50307641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 188 - 465
Target Start/End: Original strand, 50307448 - 50307722
Alignment:
| Q |
188 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtgcatgagattaatcaacctcatgatcaagttgtggaagtagaaaaaatt |
287 |
Q |
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| T |
50307448 |
ggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaatcacat---caagccgaggaagtagaaaaaatt |
50307544 |
T |
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| Q |
288 |
gagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaatcacatcaagctgaggaagtagaaaaaattgagaatattcaagaacgtg |
387 |
Q |
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| T |
50307545 |
gagaatattcaagaacgcgatcaagttgataatgtacctgagattaatcaatcacatgaagctggggaagtagaaaaaattgagaatattctagaacgtg |
50307644 |
T |
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| Q |
388 |
atcaagttgaaaatatacctgagattaatcaatcacatcaagctgaggaagtagaaaaaattgagaatattcaagaac |
465 |
Q |
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| T |
50307645 |
atcaagttgaaaatgtacctgagattaatcaatcacatcaagttggggaagtagaaaaaattgagaatattcaagaac |
50307722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 188 - 421
Target Start/End: Original strand, 50307529 - 50307759
Alignment:
| Q |
188 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtgcatgagattaatcaacctcatgatcaagttgtggaagtagaaaaaatt |
287 |
Q |
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| T |
50307529 |
ggaagtagaaaaaattgagaatattcaagaacgcgatcaagttgataatgtacctgagattaatcaatcacatga---agctggggaagtagaaaaaatt |
50307625 |
T |
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| Q |
288 |
gagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaatcacatcaagctgaggaagtagaaaaaattgagaatattcaagaacgtg |
387 |
Q |
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| T |
50307626 |
gagaatattctagaacgtgatcaagttgaaaatgtacctgagattaatcaatcacatcaagttggggaagtagaaaaaattgagaatattcaagaacatg |
50307725 |
T |
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| Q |
388 |
atcaagttgaaaatatacctgagattaatcaatc |
421 |
Q |
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| T |
50307726 |
atcaagttgaaaatgtacctaagatcaatcaatc |
50307759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 183 - 340
Target Start/End: Original strand, 50307605 - 50307759
Alignment:
| Q |
183 |
gctggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaagtgtgcatgagattaatcaacctcatgatcaagttgtggaagtagaaa |
282 |
Q |
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||||||||||||||| ||||||||||||||| ||||| |||||||||||||| ||| | ||||||||||||| | | ||||||||| ||||||||||| |
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| T |
50307605 |
gctggggaagtagaaaaaattgagaatattctagaacgtgatcaagttgaaaatgtacctgagattaatcaatcac---atcaagttggggaagtagaaa |
50307701 |
T |
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| Q |
283 |
aaattgagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaatc |
340 |
Q |
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| T |
50307702 |
aaattgagaatattcaagaacatgatcaagttgaaaatgtacctaagatcaatcaatc |
50307759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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