View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_17 (Length: 450)
Name: NF0874_low_17
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 44 - 438
Target Start/End: Complemental strand, 18975384 - 18974991
Alignment:
| Q |
44 |
cactcatcatcaacatacaatgagatgttgttctatcttcttcggagccaacttctcgatcctgttatgatcataagctttcataattaaaagtttatgg |
143 |
Q |
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| T |
18975384 |
cactcatcatcaacatacaatgagatgttgttctatcttcttcggagccaacttctcgatcctgttatgatcataagctttcataattaaaagtttacgg |
18975285 |
T |
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| Q |
144 |
ttctctacattgtagtgtttaaaatagtgacctcataattgttaatttaacaaaaataagaaaatgcagatatgtgtctcaaaacccaaccgcaaacttt |
243 |
Q |
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| T |
18975284 |
ttctctacattgtagtgtttaaaatagtcac-tcataattgttaatttaacaaaaataagaaaatgcagatatgtgtctcaaaacccaaccgcaaacttt |
18975186 |
T |
|
| Q |
244 |
tgatttgaacgacaacatcggttgcgtttatattttggacaattcacaagtattggtccatatagtgaactatcaatgaaagtggttattgtaaaacttc |
343 |
Q |
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| T |
18975185 |
tgatttgaacgacaacatcgattgcgtttatatttcggacaattcaaaagtattggtccatatagtgaactatcaatgaaagtggttattgtaaaacttc |
18975086 |
T |
|
| Q |
344 |
aaccaaactcccttgtaatcaaagattctctatattcacgcattcgtaacattgatagtcattcaattaagattggactatcccgattcaaccta |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18975085 |
aaccaaactcccttgtaatcaaagattctctatattcacgcattcgtaacattgatagtaattcaattaagattggactatcccgattcaaccta |
18974991 |
T |
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