View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_20 (Length: 442)
Name: NF0874_low_20
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 79 - 415
Target Start/End: Complemental strand, 41705742 - 41705406
Alignment:
| Q |
79 |
agtgagatgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagca |
178 |
Q |
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| T |
41705742 |
agtgaaatgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagca |
41705643 |
T |
|
| Q |
179 |
tgcatgggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705642 |
tgcatgggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttg |
41705543 |
T |
|
| Q |
279 |
aacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggagagagtgtaatcgg |
378 |
Q |
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| T |
41705542 |
aacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggagagagtgtaatcgg |
41705443 |
T |
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| Q |
379 |
agcctggtgagagtgggagagagagttggttgtggtg |
415 |
Q |
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| T |
41705442 |
agcctggtgagagtgggagagagagttggttgtggtg |
41705406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
260 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
340 |
Q |
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||||||||| ||||| | ||| |||| || ||||||||||||||||| || ||||||||||||||||| |||||| |||| |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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