View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0874_low_22 (Length: 417)

Name: NF0874_low_22
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0874_low_22
NF0874_low_22
[»] chr3 (1 HSPs)
chr3 (16-417)||(373570-373965)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 373570 - 373965
Alignment:
Q  16 attgcagtcgttaagaaggtaatcaacttttttcgaataaatacgaacaacacctaagagtaggtgagctgacatcctcaatgcaatgggaacaccagga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  373570 attgcagtcgttaagaaggtaatcaacttttttcgaataaatacgaacaacacctaagagtaggtgagctgacatcctcaatgcaatgggaacaccagga 373669  T
Q  116 tccattatatgctctaaaagtaacattcaagatcaatgtcaaatcactacgttaatcattacaacaatattgaaaaacattgtagaaagcagaacctcta 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  373670 tccattatatgctctaaaagtaacattcaagatcaatgtc-aatcactacgttaatcattacaacaatattgaaaaacattgtagaaagcagaacctcta 373768  T
Q  216 tacacttgcttaaaaaatgaaatttcaatnnnnnnnnnnnnnnnnnctaagctgataaaaaacagattgggtccaataaaggatgaaactagctatgaca 315  Q
    |||| ||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  373769 tacaattgcttaaaaaatgaaatttcaat-----aaaaaaaaaaaactaagctgataaaaaacagattgggtccaataaaggatgaaactagctatgaca 373863  T
Q  316 taaaatctgggaacaaaccgatcatccggtcaaaaaatggcagttcaggtgatttcaccagttggaccactatttcttttaggattttatttcacaaaac 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  373864 taaaatctgggaacaaaccgatcatccggtcaaaaaatggcagttcaggtgatttcaccagttggaccactatttcttttgggattttatttaacaaaac 373963  T

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