View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0874_low_24 (Length: 409)

Name: NF0874_low_24
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0874_low_24
NF0874_low_24
[»] chr8 (2 HSPs)
chr8 (9-333)||(12011952-12012275)
chr8 (333-374)||(12011870-12011911)
[»] chr1 (3 HSPs)
chr1 (164-258)||(35896473-35896567)
chr1 (150-223)||(1616021-1616093)
chr1 (165-227)||(14580339-14580400)
[»] chr3 (3 HSPs)
chr3 (149-258)||(8108763-8108871)
chr3 (146-223)||(12129141-12129218)
chr3 (146-223)||(9796535-9796611)
[»] chr6 (1 HSPs)
chr6 (146-225)||(19691592-19691671)
[»] scaffold0804 (1 HSPs)
scaffold0804 (165-227)||(56-117)
[»] chr2 (2 HSPs)
chr2 (162-259)||(17496534-17496629)
chr2 (146-223)||(35665808-35665884)
[»] chr4 (2 HSPs)
chr4 (168-223)||(11442805-11442858)
chr4 (168-223)||(11550837-11550890)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 333
Target Start/End: Complemental strand, 12012275 - 12011952
Alignment:
Q  9 gagtcttcattcttcagatgctcctaaccttcaaagtttgatccaaaacttcaacttctcgcttgattcaaatgctcatatatatgtacnnnnnnnnnga 108  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||          |    
T  12012275 gagtcttcaatcttcagatgctcctaaccttcaaagtttgatccaaaacttcaacttctcgcttgattctgatgctcatatatatgtacttttttttt-a 12012177  T
Q  109 aggagttatagatgtacttatttaacattttgtcttctaatctatgatcctatatacttgaacatacattaacatatttaattgttccttttatattttg 208  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  12012176 aggagttatagatgtacttatttaatattttgtattctaatctatgatcttatatacttgaacatacattaacatatttaattcttctttttatattttg 12012077  T
Q  209 ctatcatcaaaactttaaaaacattacataaaatcaattttggttcaacaatataaatccctctataagtaaatcgtatttgagtcttaagctttttgtt 308  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12012076 ctatcatcaaatctttaaaaacattacataaaatcaattttggttcaacaatataaatccctctataaataaatcgtatttgagtcttaagctttttgtt 12011977  T
Q  309 aaaaattaataattttccttataga 333  Q
    |||||||||||||||||||||||||    
T  12011976 aaaaattaataattttccttataga 12011952  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 12011911 - 12011870
Alignment:
Q  333 ataaatgtggaggataaccgaggctaaactaggacatatggt 374  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12011911 ataaatgtggaggataaccgaggctaaactaggacatatggt 12011870  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 35896473 - 35896567
Alignment:
Q  164 acttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactttaaaaacattacataaaatcaattttggttcaaca 258  Q
    ||||||||||||||||||||||| |||||||| ||| ||| |||  |||||||||||||| | | |||||| | |||| | ||||||||||||||    
T  35896473 acttgaacatacattaacatattcaattgttcttttaatactttcttatcatcaaaacttcagatacattatacaaaacctattttggttcaaca 35896567  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 1616093 - 1616021
Alignment:
Q  150 ctatgatcctatatacttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactt 223  Q
    ||||||||||   |||||||||| |||||||||||| |||||||| |||||||| |||| ||| ||||||||||    
T  1616093 ctatgatcctgcttacttgaacacacattaacatatctaattgtt-cttttatactttgttattatcaaaactt 1616021  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 14580400 - 14580339
Alignment:
Q  165 cttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactttaaa 227  Q
    |||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||| ||||||    
T  14580400 cttgaacatatattaacatatctaattgttc-tttaatactttgttatcatcaaaattttaaa 14580339  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 8108871 - 8108763
Alignment:
Q  149 tctatgatcctatatacttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactttaaaaacattacataaaatcaattt 248  Q
    |||||||||||| ||||||||||| |||||| ||||||  |||||| |||||||| |||| ||||||||||||   | || ||||| | |||||| ||||    
T  8108871 tctatgatcctacatacttgaacacacattagcatattccattgtt-cttttatactttgttatcatcaaaaccgcataagcattatacaaaatccattt 8108773  T
Q  249 tggttcaaca 258  Q
    ||||||||||    
T  8108772 tggttcaaca 8108763  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 12129218 - 12129141
Alignment:
Q  146 taatctatgatcctatatacttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactt 223  Q
    |||| |||| ||||| |||| |||||||| |||| |||||| |||||||| |||||||||||  ||||||||||||||    
T  12129218 taatttatggtcctacatacatgaacatatattagcatattcaattgttctttttatattttattatcatcaaaactt 12129141  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 9796535 - 9796611
Alignment:
Q  146 taatctatgatcctatatacttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactt 223  Q
    ||||||||||||||  | ||||||||||| ||||||||||  ||||||| |||| ||| |||  ||||||||||||||    
T  9796535 taatctatgatcctgcacacttgaacatatattaacatatccaattgtt-ctttaatactttattatcatcaaaactt 9796611  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 19691671 - 19691592
Alignment:
Q  146 taatctatgatcctatatacttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaacttta 225  Q
    ||||||||||||||  | | |||||||||||||| |||||  |||||| | ||||||||||||  |||||||||||||||    
T  19691671 taatctatgatcctccagatttgaacatacattagcatatccaattgtactttttatattttgtaatcatcaaaacttta 19691592  T

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Target: scaffold0804 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 117 - 56
Alignment:
Q  165 cttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactttaaa 227  Q
    |||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||| ||||||    
T  117 cttgaacatatattaacatatctaattgttc-tttaatactttgttatcatcaaaattttaaa 56  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 17496534 - 17496629
Alignment:
Q  162 atacttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactttaaaaacattacataaaatcaattttggttcaacaa 259  Q
    ||||||||||| |||||||||| || ||||||| |||||| |  ||| ||||||||||| || |||||||||  | |||||  |||||||||||||||    
T  17496534 atacttgaacacacattaacatgttcaattgtt-ctttta-accttgttatcatcaaaatttcaaaaacattgtacaaaattcattttggttcaacaa 17496629  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 35665884 - 35665808
Alignment:
Q  146 taatctatgatcctatatacttgaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactt 223  Q
    |||||||||||| |  |||||| |||||| ||||||||||| |||||||  ||| |||||| | ||||||||||||||    
T  35665884 taatctatgatcgtgcatacttaaacatatattaacatattcaattgtt-ttttaatatttcgttatcatcaaaactt 35665808  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 11442805 - 11442858
Alignment:
Q  168 gaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactt 223  Q
    ||||| ||||||||||||| ||||||||  |||||| |||| ||||||||||||||    
T  11442805 gaacacacattaacatattcaattgttc--tttatagtttgttatcatcaaaactt 11442858  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 11550890 - 11550837
Alignment:
Q  168 gaacatacattaacatatttaattgttccttttatattttgctatcatcaaaactt 223  Q
    ||||| ||||||||||||| ||||||||  |||||| |||| ||||||||||||||    
T  11550890 gaacacacattaacatattcaattgttc--tttatagtttgttatcatcaaaactt 11550837  T

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