View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0874_low_3 (Length: 676)

Name: NF0874_low_3
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0874_low_3
NF0874_low_3
[»] chr6 (1 HSPs)
chr6 (5-666)||(10316454-10317115)


Alignment Details
Target: chr6 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 5 - 666
Target Start/End: Complemental strand, 10317115 - 10316454
Alignment:
Q  5 cttcatcataccttttgctttctatagagttcaattgtcaaagattctaccttacannnnnnnnnnnnnnnnnnnnnggaaatgcatgatattgatatga 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||||||||||||    
T  10317115 cttcatcacaccttttgctttctatagagttcaattgtcaaagattctaccttacactttttctttctttctttcttggaaatgcatgatattgatatga 10317016  T
Q  105 tatattattgtaggatgattgggttgtgtcaaagattttcatcaagaacaacattgaagttaaaaagactacttcattttccaatcttttaaggatgaac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317015 tatattattgtaggatgattgggttgtgtcaaagattttcatcaagaacaacattgaagttaaaaagactacttcattttccaatcttttaaggatgaac 10316916  T
Q  205 tcaataggtgatgatttattggatttttcttcactcccacctcttgtggatcctccttttagcaacaataccattgatgatcatgacttcaaaggaatca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316915 tcaataggtgatgatttattggatttttcttcactcccacctcttgtggatcctccttttagcaacaataccattgatgatcatgacttcaaaggaatca 10316816  T
Q  305 attcatcaccttcatcatcaaatggttattgttttccaagctacttaatgaacaatgaaattaatctcacaaataattatcatgctaccaaccaagggaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316815 attcatcaccttcatcatcaaatggttattgttttccaagctacttaatgaacaatgaaattaatctcacaaataattatcatgctaccaaccaagggaa 10316716  T
Q  405 tttcaatggtccattaatgcaaagtagctcatcttcatcacatcaacttcaacctcaaatccaaattccaaacacacccttgaatgagaacatgttatca 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316715 tttcaatggtccattaatgcaaagtagctcatcttcatcacatcaacttcaacctcaaatccaaattccaaacacacccttgaatgagaacatgttatca 10316616  T
Q  505 aattattcttacatgaatcaagggaataataacaatggttacatttatggattggaaaataaagagtgcaagatggagcaattctccaccaacaattcta 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10316615 aattattcttacatgaatcaagggaataataacaatggttacatttatggattggaaaataaagagtgcaagatggagcaattctctaccaacaattcta 10316516  T
Q  605 tggtgagcatttcacaagacacatgtttgagcaatgacataaacaatgaaacatcatctgtg 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316515 tggtgagcatttcacaagacacatgtttgagcaatgacataaacaatgaaacatcatctgtg 10316454  T

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