View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_31 (Length: 357)
Name: NF0874_low_31
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 36163185 - 36163010
Alignment:
| Q |
7 |
tcgaagaatatcctatacattcaaatgggcacataggtgtgcctaaagatctagctgatattgttgagtcaaccattggagctcttttcattgattgcaa |
106 |
Q |
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| T |
36163185 |
tcgaagaatatcctatacattcaaatgggcacataggtgtgcctaaagatctagctgatattgttgagtcaaccattggagctcttttcattgattgcaa |
36163086 |
T |
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| Q |
107 |
ctcatccctcgaaattgtgtggaaggtattcactaatttttcacataatatgatatatttaaaaatccatcaaaag |
182 |
Q |
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| T |
36163085 |
ctcatccctcgaaattgtgtggaaggtattcactaatttttcacttaatatgatatatttaaaaatccatcaaaag |
36163010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 36158084 - 36157912
Alignment:
| Q |
9 |
gaagaatatcctatacattcaaatgggcacataggtgtgcctaaagatctagctgatattgttgagtcaaccattggagctcttttcattgattgcaact |
108 |
Q |
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| T |
36158084 |
gaagattatcctatacattcaaatgggcacatacatgtgcctaaagatctagctgatatggttgagtcaacgattggagctctcttcattgattgtgact |
36157985 |
T |
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| Q |
109 |
catccctcgaaattgtgtggaaggtattcactaatttttcacataatatgatatatttaaaaatccatcaaaag |
182 |
Q |
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| T |
36157984 |
catccctcgaaattgtgtggaaggtactcaataatttttcacttattgcgatatattt-aaaatccatcaaaag |
36157912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 36162953 - 36162866
Alignment:
| Q |
240 |
gacaccatctcatctataagtaaaacgtgattgtttcaaatatcttctacgcattgtcttagaagtgattttgagctcatataaattagt |
329 |
Q |
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| T |
36162953 |
gacaccatctcat--ataagtaaaacgtgattgtttcaaatatcttctacgcattgtcttagaagtgattttgagctcatataaattagt |
36162866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 36081399 - 36081325
Alignment:
| Q |
60 |
gctgatattgttgagtcaaccattggagctcttttcattgattgcaactcatccctcgaaattgtgtggaaggta |
134 |
Q |
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| T |
36081399 |
gctgatattgttgagtcaaccatcggtgcaatcttcgttgattgtggctcatccatcgaaactgtgtggaaggta |
36081325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 36147584 - 36147535
Alignment:
| Q |
251 |
atctataagtaaaacgtgattgtttcaaatatcttctacgcattgtctta |
300 |
Q |
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| T |
36147584 |
atctataagtaaaacattattgttttaaatatcttctacgtattatctta |
36147535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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