View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_35 (Length: 333)
Name: NF0874_low_35
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 33966493 - 33966723
Alignment:
| Q |
10 |
aataatatgtcttccatcgaagcttatctactactcaagtccaatcaattgattaccttaacatacatattttatcacaatttttcgcaatatcaagaat |
109 |
Q |
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| T |
33966493 |
aataatatgtcttccatccaagcttatctactactcgagtccaatcaattgattaccttaacatacatattttatcacaatttttcgcaatatcaagaat |
33966592 |
T |
|
| Q |
110 |
tccgacgtgaccgcaaattaaaaactttggacacaatcacaccacaaacaaaggaaaatgagataaagtatagtactactcacgtgtaaactcctgcatg |
209 |
Q |
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| T |
33966593 |
tccgacgtgaccgcaaattaaaaactttggacacaatgacaccacaaacaaaggaaaatgagataaagtatagtactactcacgtgtaaactcctgcatg |
33966692 |
T |
|
| Q |
210 |
aaccttgatgacaactctaacaagattgatg |
240 |
Q |
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| T |
33966693 |
aaccttgatgacaactctaacaagattgatg |
33966723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 43076909 - 43076868
Alignment:
| Q |
186 |
tactcacgtgtaaactcctgcatgaaccttgatgacaactct |
227 |
Q |
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| T |
43076909 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactct |
43076868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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