View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_36 (Length: 314)
Name: NF0874_low_36
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 50307200 - 50307410
Alignment:
| Q |
21 |
acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaataatgaagaaacaacagaaacaa |
120 |
Q |
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| T |
50307200 |
acatcatcaaagactccaaaacaaggtactactaagaagagtagttcaaagaatcttgctacaaaaagtagtactaat---gaagaaacaacagaaacaa |
50307296 |
T |
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| Q |
121 |
tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca |
220 |
Q |
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| T |
50307297 |
tcaatgttgttgaaactaagacagaaccaaaagttaaagaagctatcacaaacaatgataatgctggggaagtagaagaaattgagaatattcaagaaca |
50307396 |
T |
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| Q |
221 |
tgatcaagttgaaa |
234 |
Q |
| |
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|||||||||||||| |
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| T |
50307397 |
tgatcaagttgaaa |
50307410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 50307688 - 50307788
Alignment:
| Q |
185 |
tggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaaatgtacctaagatcaatcaatcgcacgatcatggtgactttgaacttgaa |
284 |
Q |
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| T |
50307688 |
tggggaagtagaaaaaattgagaatattcaagaacatgatcaagttgaaaatgtacctaagatcaatcaatcgcacgatcatggtgactttgaacttgaa |
50307787 |
T |
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| Q |
285 |
c |
285 |
Q |
| |
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| |
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|
| T |
50307788 |
c |
50307788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 50307605 - 50307678
Alignment:
| Q |
183 |
gctggggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaaatgtacctaagatcaatcaatc |
256 |
Q |
| |
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| T |
50307605 |
gctggggaagtagaaaaaattgagaatattctagaacgtgatcaagttgaaaatgtacctgagattaatcaatc |
50307678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 50307448 - 50307516
Alignment:
| Q |
188 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaaatgtacctaagatcaatcaatc |
256 |
Q |
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| T |
50307448 |
ggaagtagaaaaaattgagaatattcaagaacgtgatcaagttgaaaatatacctgagattaatcaatc |
50307516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 50307529 - 50307597
Alignment:
| Q |
188 |
ggaagtagaagaaattgagaatattcaagaacatgatcaagttgaaaatgtacctaagatcaatcaatc |
256 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||| |
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| T |
50307529 |
ggaagtagaaaaaattgagaatattcaagaacgcgatcaagttgataatgtacctgagattaatcaatc |
50307597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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