View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0874_low_41 (Length: 301)
Name: NF0874_low_41
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 24285588 - 24285323
Alignment:
| Q |
1 |
catttgttaaagcagatgttgaggtgatcaatgaagcctgaagaatgctgagaccctgcaacatgtaaacaaataaagcactgtaatattaatgtatgga |
100 |
Q |
| |
|
||||||| |||||||| ||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
24285588 |
catttgtcaaagcagacgttgatgt---caatgaagccttcagaatgctgagaccttgcaacatgtaaacaaataaagcattgtaata---atgtatgga |
24285495 |
T |
|
| Q |
101 |
aatgaaaattaattgcaataacaacacgaaaagtcttaagttgtgaattacctcgttcacatcaattctaaccactttttcctctacatcagatagagga |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24285494 |
aatgaaaattaattgcaataacaacgcgaaaagtcttaagttgtgaattacctcgttcacaccaattctaaccactttttcctctacatcagatagggga |
24285395 |
T |
|
| Q |
201 |
acgtttaaactctttagatgtgaaatagcattgaaggatgaggttggagtcacaaccaagtcatctgtaacc |
272 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24285394 |
acgtttaaactcttcagatgtgaaatagcattgaaggatgaggttggagtcacaactaagtcatctgtaacc |
24285323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 10990158 - 10990053
Alignment:
| Q |
163 |
caattctaaccactttttcctctacatcagatagaggaacgtttaaactctttagatgtgaaatagcattgaaggatgaggttggagtcacaaccaagtc |
262 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| ||||| ||| |||| || ||||||||||| ||| |||||| || ||||||||||||||||||| |
|
|
| T |
10990158 |
caattctaaccaccttttcctcaacatcagatacaggaatatttgaactattcagatgtgaaattgcagcgaaggacgacattggagtcacaaccaagtc |
10990059 |
T |
|
| Q |
263 |
atctgt |
268 |
Q |
| |
|
|||||| |
|
|
| T |
10990058 |
atctgt |
10990053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1471 times since January 2019
Visitors: 6143