View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0874_low_47 (Length: 263)

Name: NF0874_low_47
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0874_low_47
NF0874_low_47
[»] chr1 (2 HSPs)
chr1 (1-217)||(40588808-40589024)
chr1 (7-53)||(25118020-25118066)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 40588808 - 40589024
Alignment:
Q  1 agagctttgcattgaagagggtgagagtgacattgaagacaagcttttcttaaaagtcctgttgaagttgcaagcatagcactagcaacatgaagaggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40588808 agagctttgcattgaagagggtgagagtgacattgaagacaagcttttcttaaaattcctgttgaagttgcaagcatagcactagcaacatgaagaggtg 40588907  T
Q  101 tcacttgtgcatgacctcttcttgttgctagattcactgcttgtttaacaacagttgcagcttcttgtgtaagtgcttgaagttgtatactgcaaattcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  40588908 tcacttgtgcatgacctcttcttgttgctagattcactgcttgtttaacaacagttgcagcttcttgtgtaagtgcttgaagctgtatactacaaattcc 40589007  T
Q  201 tcctctcatgatcttcg 217  Q
    |||||||||||||||||    
T  40589008 tcctctcatgatcttcg 40589024  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 25118066 - 25118020
Alignment:
Q  7 ttgcattgaagagggtgagagtgacattgaagacaagcttttcttaa 53  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  25118066 ttgcattgaagagggtgagagtgagattgaagacaagctgttcttaa 25118020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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