View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_52 (Length: 251)
Name: NF0874_low_52
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 24856348 - 24856212
Alignment:
| Q |
9 |
gaagaatatgatcttacagttggtcttggttcatcattgcatggctgtgatcaacaagaagagggaaaataaataaattaaggtcaaaatttgaaatcat |
108 |
Q |
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| T |
24856348 |
gaagaatatgatcttacagttggtcttggttcatcattgcatggctgtgatcaacaagaagagggaaaataaataaattaaggtcaaaatttgaaatcat |
24856249 |
T |
|
| Q |
109 |
tcttttcctctctcaagtatttttcataacttagctt |
145 |
Q |
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| T |
24856248 |
tcttttcctctctcaagtatttttcataatttagctt |
24856212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 24856164 - 24856106
Alignment:
| Q |
193 |
cttacaaggttattgttggaatatttgcaggagttttcccaccattttttcccattgcc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24856164 |
cttacaaggttattgttggaatatttgcaggagttttcccaccattttttcccattgcc |
24856106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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