View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0874_low_59 (Length: 230)
Name: NF0874_low_59
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_59 |
 | |
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| [»] chr2 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
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|
| [»] chr4 (2 HSPs) |
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| [»] scaffold0436 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0149 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
| | |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0670 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 23844879 - 23844677
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaa |
127 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23844879 |
aggataggtgggttaaatgaacgaataagatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaag |
23844780 |
T |
|
| Q |
128 |
ttttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatg |
227 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23844779 |
atttagatatgatgtaaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatg |
23844680 |
T |
|
| Q |
228 |
atg |
230 |
Q |
| |
|
||| |
|
|
| T |
23844679 |
atg |
23844677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 23210788 - 23210990
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaa |
127 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
23210788 |
aggataggtgggttaaatgaacgaataagatgaaggatgaagtgtgtcacaaggagtaaaagaagaagagaatgaaaattaaactaatggtgggtgtaag |
23210887 |
T |
|
| Q |
128 |
ttttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatg |
227 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23210888 |
atttagatgtgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatg |
23210987 |
T |
|
| Q |
228 |
atg |
230 |
Q |
| |
|
||| |
|
|
| T |
23210988 |
atg |
23210990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 24431473 - 24431673
Alignment:
| Q |
30 |
gataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaatt |
129 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24431473 |
gataggtgggttaagtgaacggataagatgaaggatgaaatatgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagaa |
24431572 |
T |
|
| Q |
130 |
ttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatgat |
229 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
24431573 |
ttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacataagatgatgat |
24431672 |
T |
|
| Q |
230 |
g |
230 |
Q |
| |
|
| |
|
|
| T |
24431673 |
g |
24431673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 32410584 - 32410382
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaa |
127 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
32410584 |
aggataggtgggttaaatgaacgaataagatgaaggatgaagtgtgccaccaggagtaaaagatgcagagaatgaaaattaaactaatggtgggtgtaag |
32410485 |
T |
|
| Q |
128 |
ttttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatg |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32410484 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatg |
32410385 |
T |
|
| Q |
228 |
atg |
230 |
Q |
| |
|
||| |
|
|
| T |
32410384 |
atg |
32410382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 23844883 - 23845085
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaa |
127 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23844883 |
aggataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcagtgggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaag |
23844982 |
T |
|
| Q |
128 |
ttttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatg |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23844983 |
atttagatatgatgtgaatatgacaaaattatgagttagacataggtagacgaatatatggtgtaaaataattatgagttgctaatgacgtaagatgatg |
23845082 |
T |
|
| Q |
228 |
atg |
230 |
Q |
| |
|
||| |
|
|
| T |
23845083 |
atg |
23845085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 18544653 - 18544741
Alignment:
| Q |
142 |
tgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatgatg |
230 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
18544653 |
tgaatatgacaaaattatgagttagtcataagtagacaaatatatgatgtaaattaatgatgagttgctaatgacgtaagatgatgatg |
18544741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 878 - 1080
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaa |
127 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
878 |
aggataggtgggttaaaagaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggtgggtgtaag |
977 |
T |
|
| Q |
128 |
ttttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatg |
227 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
978 |
atttatatatgatgtgaatatgccaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatg |
1077 |
T |
|
| Q |
228 |
atg |
230 |
Q |
| |
|
||| |
|
|
| T |
1078 |
atg |
1080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 12057070 - 12056880
Alignment:
| Q |
39 |
gttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaattttagataag |
138 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12057070 |
gttaaatgaacggatatgatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatttagatat- |
12056972 |
T |
|
| Q |
139 |
atgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatgatg |
230 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
12056971 |
atgtgaatatgacaaaattatgagttagacataagtagacaaatatatggtgtaaaataatgatgaattgctaatgacgtaagatgatgatg |
12056880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 13296282 - 13296217
Alignment:
| Q |
163 |
ttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatga |
228 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||| |
|
|
| T |
13296282 |
ttagacttaagtagacgaatatatggtgtaagttgatgatgagttgctaatgacgtaagataatga |
13296217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 36713 - 36915
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaa |
127 |
Q |
| |
|
|||||||||||||| |||| | | ||||||||||||||||| | |||||||| |||||||| ||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
36713 |
aggataggtaggtttaatgcatggataagatgaaggatgaagtatgtcactatgagtaaaatatgcagagaatgaaaatcaaactaatggtgggtgtaag |
36812 |
T |
|
| Q |
128 |
ttttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatg |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
36813 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
36912 |
T |
|
| Q |
228 |
atg |
230 |
Q |
| |
|
||| |
|
|
| T |
36913 |
atg |
36915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 24495462 - 24495260
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaa |
127 |
Q |
| |
|
|||||||||||||| |||| | | ||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
24495462 |
aggataggtaggtttaatgcatggataagatgaaggatgaagtatgtcactaggagtaaaagatgctgagaatgaaaatcaaactaatggtgggtgtaag |
24495363 |
T |
|
| Q |
128 |
ttttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatg |
227 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
24495362 |
atttaaatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
24495263 |
T |
|
| Q |
228 |
atg |
230 |
Q |
| |
|
||| |
|
|
| T |
24495262 |
atg |
24495260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 23450349 - 23450146
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaa |
127 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||||||| | |||||||| |||||||| ||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
23450349 |
aggataggtgggttaaatggacggataagatgaaggatgaagtatgtcactaagagtaaaaaatgcaaagaatgaaaattaaactaatggtgggtgtaag |
23450250 |
T |
|
| Q |
128 |
ttttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgt-aaaataatgacgagttgctaatgacgtaagatgat |
226 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
23450249 |
atttagatatgacgtgaatatgacaaaattaagagttagacataagtagacgaatatatggtgtaaaaataatgatgagttgctaatgacgtaagatgat |
23450150 |
T |
|
| Q |
227 |
gatg |
230 |
Q |
| |
|
|||| |
|
|
| T |
23450149 |
gatg |
23450146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 12190 - 12386
Alignment:
| Q |
30 |
gataggtaggttaaatgaacgaataagatgaaggatgaaatgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaatt |
129 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | | |
|
|
| T |
12190 |
gataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaactaaactaatggtgggtgaacgat |
12289 |
T |
|
| Q |
130 |
ttagataagatgtgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgat |
226 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
12290 |
ttagatatgatgtgaatatgacaaaattatgagttagaaatgagtagacgaatatatggtataaaataatgatgagtttctaatgacgtaagatgat |
12386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 16478330 - 16478174
Alignment:
| Q |
72 |
tgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaaattttagataagatgtgaatatgacaaaattatcagttagacata |
171 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||| |||||||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
16478330 |
tgtcactaggagtaaaatatgcagagaatgaaaattgaactaatggtgggtgtaagatttagatatgatgttaatatgacaa--ttatgagttagacata |
16478233 |
T |
|
| Q |
172 |
agtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatgatg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16478232 |
agtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatg |
16478174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 42532 - 42597
Alignment:
| Q |
163 |
ttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatgacgtaagatgatga |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
42532 |
ttagacttaagtagacgaatatatggtgtaaattaatgatgagttgctaatgacgtaagataatga |
42597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 16481284 - 16481244
Alignment:
| Q |
28 |
aggataggtaggttaaatgaacgaataagatgaaggatgaa |
68 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
16481284 |
aggataggtgggttaaatgaacggataagatgaaggatgaa |
16481244 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0670 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0670
Description:
Target: scaffold0670; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 5774 - 5701
Alignment:
| Q |
142 |
tgaatatgacaaaattatcagttagacataagtagacgaatatatggtgtaaaataatgacgagttgctaatga |
215 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
5774 |
tgaacatgacaaaattatgagttagacataagtagacgaatatatggtgtaaattaatgaagagttgctaatga |
5701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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