View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0874_low_8 (Length: 537)
Name: NF0874_low_8
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 195 - 443
Target Start/End: Complemental strand, 36586397 - 36586147
Alignment:
| Q |
195 |
caaaacatgcagatatatatttagactcgcctttgtatgaatgaaagtaatcaat--agtctggaaagtcttgaacagggactatcagtggttannnnnn |
292 |
Q |
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| T |
36586397 |
caaaacatgcagatatatatttagactcgactttgtatgaatgaaagtaatcaatcgagtctggaaagtcttgaacagggactatcagtggttatttttt |
36586298 |
T |
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| Q |
293 |
naggctaatttatagcacgctatgttagtatccactatccatggttcgaaggttggaccttctgattattactcctttcatggccctcagctcaccgatc |
392 |
Q |
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| T |
36586297 |
taggctaatttatagcacgctatgttagtatccactatccatggtttgaaggttggactttctgattattactcctttcatggccctcagctcaccgatc |
36586198 |
T |
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| Q |
393 |
gagctgtctgcttaactatttaatttcgtagaaactaatctttgcattgat |
443 |
Q |
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| T |
36586197 |
gagctgtctgcttaactatttaatttcgtagaaactaatctttgcattgat |
36586147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 36586591 - 36586427
Alignment:
| Q |
1 |
ttctatttatattttctgcttgtcattgatatttagattattggtatgtactaggttatagaagtggagataaatggggtgaagcaaaagagtggcgtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36586591 |
ttctatttatattttctgcttgtcattgatatttagattattggtatgtactaggttatagaagtggagataaatggggtgaagcaaaagagtggcgtcc |
36586492 |
T |
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| Q |
101 |
atataaagaaatgcaggtagatttcatgtctctaagattggtaattgaacttaaacacagatgta |
165 |
Q |
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| T |
36586491 |
atataaagaaatgcaggtagatttcatgtctctaagattggtaattgaacttaaacacagatgta |
36586427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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